PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06298.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 1098aa MW: 117984 Da PI: 9.5187

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06298.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.1	1.5e-30	196	280	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++ Zmw_sc06298.1.g00020.1.am.mk 196 RWPRDETLALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYNRSAKKCKEKFENVHKYYKRTKDGRAGRQDGKS--YRF 274 8*******************************************************************866665..* PP trihelix 82 fdqlea 87 f++lea Zmw_sc06298.1.g00020.1.am.mk 275 FSELEA 280 ***985 PP
2	trihelix	102.6	3e-32	565	650	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r +me r++++ k+p We++s mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+t+py Zmw_sc06298.1.g00020.1.am.mk 565 RWPKTEVHALIQLRMDMEMRYQETGPKGPMWEDISVGMRRMGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTYPY 644 8*******************************************************************8.99*** PP trihelix 82 fdqlea 87 f+qlea Zmw_sc06298.1.g00020.1.am.mk 645 FHQLEA 650 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.1E-4	193	255	IPR001005	SANT/Myb domain
Pfam	PF13837	2.3E-21	195	281	No hit	No description
PROSITE profile	PS50090	7.004	195	253	IPR017877	Myb-like domain
CDD	cd12203	6.12E-31	195	260	No hit	No description
SMART	SM00717	0.21	562	624	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.027	564	622	IPR017877	Myb-like domain
Pfam	PF13837	2.0E-21	564	651	No hit	No description
CDD	cd12203	1.26E-29	565	629	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence Send to blast
MLNLAPHAGT YAFLHPAPQL PTREPIGRGD ASSPSPTPAE HRGVFACFFP PFSHLGPFLV 60 LFSPSVALLS TASPPRRALR SFCRARRGGE GELLQSSGEE GELVVVPGAA VVAPMQQHQG 120 EGSPYGAQPP PETGPFSQPA ASSATPLSSR PPSSQQLRPS YKEFAGMSGT SGAGGGFRDD 180 EMLGGGSGSG ASGGNRWPRD ETLALIRIRS EMDATFRDAT LKGPLWEDVS RKLADLGYNR 240 SAKKCKEKFE NVHKYYKRTK DGRAGRQDGK SYRFFSELEA LHAAGAGAAP QPSASSAPQL 300 HALAAPESEP PPTNSMPPPA GPMQLAPISS VAPVPAPLEL PPQQPLNLQG LRFSSMSDSE 360 SDGESDDDDD MPEEMGGGQD QLGKRKRGGG GSKKLMSFFE GLLQQVTERQ EEMQRRLLET 420 MEQREEAWRR QEVALLNREQ EQLAQERAAA ASRDAAIIAF LQRIGGHSVQ PSTAVVVAAQ 480 KHVQTPPPPP KQTPHQQPKP ISASPLQQQP PQQQYQEMSP QNASTPRGAP PIPAFGASTL 540 ELAPSSEHHV DSGIGGEGGA AASSRWPKTE VHALIQLRMD MEMRYQETGP KGPMWEDISV 600 GMRRMGYNRS SKRCKEKWEN INKYYKKVKE SNKKRPEDSK TYPYFHQLEA IYRMKQQGGG 660 TAAAAAPVFP DQLNQSRHEI EGKNINDDKR NNGGSGGGTQ VTASNGEREK LREQAHARVF 720 LIREFNRSLS MPTLSQHPLT RDSHVSKIVR VNFAVTSSSD VRVPTVRTLT CQLMTNESIA 780 HLDLDPELVL RAPGTKLLAS DLLASPTAVT AGTRARRCVG AATPRSPHPP DRPHDSPLVN 840 SPWILYRVGC SDLRCVRVGF GARPHGAAAP FVCALLAVSA FVFMAAAVVS ASCAPRGFHA 900 LRMPHIARNG GKPPESGTRG PGSRTDESHC GLWTARRGCG LFAYARRGGD LRKRGEMGAA 960 SSRVAPAEPV GLELADDGNA AARQLSWAEV ETATAGFTSR QKKGTLCLSG VQSLCTFRFR 1020 STGKALLSRS HRLLELTLSG SLGSSVSIRA TLFSCWAFSC LNDAEHVSGP KANAHFPGCS 1080 VHGPGARLNC GGTTHSQG

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence Send to blast

MLNLAPHAGT YAFLHPAPQL PTREPIGRGD ASSPSPTPAE HRGVFACFFP PFSHLGPFLV  60
LFSPSVALLS TASPPRRALR SFCRARRGGE GELLQSSGEE GELVVVPGAA VVAPMQQHQG  120
EGSPYGAQPP PETGPFSQPA ASSATPLSSR PPSSQQLRPS YKEFAGMSGT SGAGGGFRDD  180
EMLGGGSGSG ASGGNRWPRD ETLALIRIRS EMDATFRDAT LKGPLWEDVS RKLADLGYNR  240
SAKKCKEKFE NVHKYYKRTK DGRAGRQDGK SYRFFSELEA LHAAGAGAAP QPSASSAPQL  300
HALAAPESEP PPTNSMPPPA GPMQLAPISS VAPVPAPLEL PPQQPLNLQG LRFSSMSDSE  360
SDGESDDDDD MPEEMGGGQD QLGKRKRGGG GSKKLMSFFE GLLQQVTERQ EEMQRRLLET  420
MEQREEAWRR QEVALLNREQ EQLAQERAAA ASRDAAIIAF LQRIGGHSVQ PSTAVVVAAQ  480
KHVQTPPPPP KQTPHQQPKP ISASPLQQQP PQQQYQEMSP QNASTPRGAP PIPAFGASTL  540
ELAPSSEHHV DSGIGGEGGA AASSRWPKTE VHALIQLRMD MEMRYQETGP KGPMWEDISV  600
GMRRMGYNRS SKRCKEKWEN INKYYKKVKE SNKKRPEDSK TYPYFHQLEA IYRMKQQGGG  660
TAAAAAPVFP DQLNQSRHEI EGKNINDDKR NNGGSGGGTQ VTASNGEREK LREQAHARVF  720
LIREFNRSLS MPTLSQHPLT RDSHVSKIVR VNFAVTSSSD VRVPTVRTLT CQLMTNESIA  780
HLDLDPELVL RAPGTKLLAS DLLASPTAVT AGTRARRCVG AATPRSPHPP DRPHDSPLVN  840
SPWILYRVGC SDLRCVRVGF GARPHGAAAP FVCALLAVSA FVFMAAAVVS ASCAPRGFHA  900
LRMPHIARNG GKPPESGTRG PGSRTDESHC GLWTARRGCG LFAYARRGGD LRKRGEMGAA  960
SSRVAPAEPV GLELADDGNA AARQLSWAEV ETATAGFTSR QKKGTLCLSG VQSLCTFRFR  1020
STGKALLSRS HRLLELTLSG SLGSSVSIRA TLFSCWAFSC LNDAEHVSGP KANAHFPGCS  1080
VHGPGARLNC GGTTHSQG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146293.2	0.0	uncharacterized LOC100279868 isoform 1
TrEMBL	A0A1D6E4F1	0.0	A0A1D6E4F1_MAIZE; GT-2-like 1
TrEMBL	B8A0E1	0.0	B8A0E1_MAIZE; Uncharacterized protein
STRING	GRMZM2G016649_P03	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175