PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06264.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 370aa    MW: 39684.5 Da    PI: 11.1777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06264.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001788110123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C  Cg  Fs    L  H+r+H
  Zmw_sc06264.1.g00010.1.am.mk  88 HECAVCGLEFSMGQALGGHMRRH 110
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-104366IPR007087Zinc finger, C2H2
SMARTSM003550.564466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SuperFamilySSF576673.39E-686115No hitNo description
Gene3DG3DSA:3.30.160.603.0E-486115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.21788115IPR007087Zinc finger, C2H2
PfamPF139122.1E-1088112IPR007087Zinc finger, C2H2
SMARTSM003550.8988110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTPARQEAEE SKEMEGLRAN ADALLSLSSS SSSSRKAMAA EFVFECKTCR RRFPSFQALG  60
GHRTSHTRLQ ARTLGDHPPQ RDGRARMHEC AVCGLEFSMG QALGGHMRRH RGEAPPAVAA  120
QQQEEEAMPD LNFPLLEEDG GGSGGRTDQE PSSSGDQPQL LNLLVKARDD EPRRSGRSRT  180
PRMKLDVGRR PPAHTGPREG AVRRGGRWLG GSVGRHLGGS GGRRLGAKSR EGVAGAAGLG  240
EGGGLGEPVQ AQSVLQEKAE RVTTRWPPSF LLLGLRGTHL SCRSPASFAS SSFITLRNSS  300
AHAQRSHCGR VCMPRRLTWR ARSVEDVVAN WSSAMPCSAR RGAVAGCGSW SVSSANTWHQ  360
SQLAARSCPG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157