PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06169.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 90aa MW: 9999.92 Da PI: 11.2502 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 23 | 73 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr g++KKA+ELS+LCdaev +++fsstg+lye++s Zmw_sc06169.1.g00060.1.am.mk 23 KRIENSTSRQVTFSKRRGGLFKKAKELSILCDAEVGLVVFSSTGRLYEFAS 73 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.49E-29 | 15 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-40 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.099 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.07E-39 | 16 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 17 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-30 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-27 | 24 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-30 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-30 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MMGIDAHVSG VGKKMGRGKI VIKRIENSTS RQVTFSKRRG GLFKKAKELS ILCDAEVGLV 60 VFSSTGRLYE FASTRFVWLV PVRLLAKIDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-20 | 15 | 74 | 1 | 60 | MEF2C |
5f28_B | 3e-20 | 15 | 74 | 1 | 60 | MEF2C |
5f28_C | 3e-20 | 15 | 74 | 1 | 60 | MEF2C |
5f28_D | 3e-20 | 15 | 74 | 1 | 60 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878665.1 | 8e-33 | MADS-box transcription factor 57 isoform X3 | ||||
Swissprot | Q6Z6W2 | 9e-33 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
TrEMBL | A0A314Z6Q3 | 5e-33 | A0A314Z6Q3_PRUYE; MADS-box protein 12 | ||||
STRING | GRMZM2G052045_P01 | 3e-33 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Publications ? help Back to Top | |||
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