PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06169.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 90aa    MW: 9999.92 Da    PI: 11.2502
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06169.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-292373151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien++ rqvtfskRr g++KKA+ELS+LCdaev +++fsstg+lye++s
  Zmw_sc06169.1.g00060.1.am.mk 23 KRIENSTSRQVTFSKRRGGLFKKAKELSILCDAEVGLVVFSSTGRLYEFAS 73
                                  79***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.49E-291576IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-401574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.0991575IPR002100Transcription factor, MADS-box
CDDcd002655.07E-391676No hitNo description
PROSITE patternPS0035001771IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-301737IPR002100Transcription factor, MADS-box
PfamPF003191.3E-272471IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-303752IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-305273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MMGIDAHVSG VGKKMGRGKI VIKRIENSTS RQVTFSKRRG GLFKKAKELS ILCDAEVGLV  60
VFSSTGRLYE FASTRFVWLV PVRLLAKIDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-201574160MEF2C
5f28_B3e-201574160MEF2C
5f28_C3e-201574160MEF2C
5f28_D3e-201574160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878665.18e-33MADS-box transcription factor 57 isoform X3
SwissprotQ6Z6W29e-33MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A314Z6Q35e-33A0A314Z6Q3_PRUYE; MADS-box protein 12
STRINGGRMZM2G052045_P013e-33(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]