PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06001.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 420aa    MW: 45716.2 Da    PI: 4.6574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06001.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.5e-141259249
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  +ien+  r+vtf kRr g+ K A  LS  ++a+vav++ s++gk+  +
  Zmw_sc06001.1.g00010.1.am.mk 12 FIENDKDRSVTFFKRRSGLHKAATDLSSFTGAKVAVVVESESGKVSSF 59
                                  8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-12162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.647363IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-16973IPR002100Transcription factor, MADS-box
PfamPF003199.0E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNRRPRRSGI NFIENDKDRS VTFFKRRSGL HKAATDLSSF TGAKVAVVVE SESGKVSSFG  60
TPSANPIIEA FLSGRAPADP AADDPETARI TELQDELYQL DKERLVMEKR AKQSKARFKK  120
IEETSSVRKL LDNDVEDLSA DELRELLRGL VQLGEGVNAQ VNANSQVEIS GQGGPSLPFS  180
SSSSRLPSQI NMPPRHLPLA PLHASSQRPQ SSWERFLPSS ISRSSLLPPA IPPMHHQAQM  240
LPVPVPPGNE AHRYSYYFPQ EQPSRQVDLA PNHAYADNVD YFNPVAPPAQ KHASYTYNFN  300
LNPVAAPQVD QNDANSNDLA ADGQPPDAYR WAPASPGNQE YHSYLRGLCV ELGLTDDSGD  360
QDAAAAAAGG GGDQENVPDR ADDGMNQQAD EMADDDWLNM SLWDFSTFPG DNPGGAAGNN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276