PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc05979.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14614.4 Da PI: 6.3907 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.9e-14 | 11 | 82 | 15 | 87 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + +p +f ++hg+ ++ +++l+ grsW+v+l+ r ++r+ ++ GW +F+ +ngL++gD++ F+++++ Zmw_sc05979.1.g00040.1.sm.mk 11 MQNVPVEFQDAHGYARRR--QVVLR-MGGRSWTVNLKRgkRPFGDRTAFKYGWHQFCVDNGLEVGDTCFFHVVHE 82 457899999999988665..45554.599*******6644444555*************************8875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.082 | 1 | 94 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.17E-12 | 1 | 78 | No hit | No description |
SMART | SM01019 | 0.0074 | 2 | 89 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.87E-16 | 7 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-21 | 7 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.6E-12 | 13 | 83 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 125 aa Download sequence Send to blast |
MPWHASRACC MQNVPVEFQD AHGYARRRQV VLRMGGRSWT VNLKRGKRPF GDRTAFKYGW 60 HQFCVDNGLE VGDTCFFHVV HERKALKEEE EEDDDDVKEE RVKEEEDDGH ALKVVSMNIT 120 PHVAW |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796563.1 | 1e-39 | B3 domain-containing protein Os03g0212300-like | ||||
Refseq | XP_025796564.1 | 1e-39 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 5e-29 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A3L6THU7 | 2e-39 | A0A3L6THU7_PANMI; B3 domain-containing protein | ||||
STRING | Pavir.Ia04671.1.p | 5e-38 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Publications ? help Back to Top | |||
---|---|---|---|
|