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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05932.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 220aa MW: 23267.7 Da PI: 8.4996 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 69.5 | 6.5e-22 | 174 | 220 | 1 | 47 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47 +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCs Zmw_sc05932.1.g00010.1.am.mk 174 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVTAGGKQQRFCQQCS 220 6*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.4E-24 | 167 | 220 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.931 | 172 | 220 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-21 | 172 | 220 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-16 | 175 | 220 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MMSGRMNAVT SADGDDFPFA PSMQPPPPPP YVGFDPSVPG GGMGPQRAGG MPHHLYDDLD 60 LAAAAAMQFQ EAPHHHQLLT LPSSLAAPMA PPPPVPMSLQ MPMPGLHGDV YPALGMVKRE 120 GGGGAEGGRI GLNLGRRTYF SPGDMLAVDR LLMRSRLGGV FGLGFGGAHH QPPRCQAEGC 180 KADLSGAKHY HRRHKVCEYH AKASVVTAGG KQQRFCQQCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 5e-17 | 175 | 220 | 6 | 51 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965676.1 | 2e-82 | squamosa promoter-binding-like protein 10 | ||||
Swissprot | A2YFT9 | 7e-69 | SPL10_ORYSI; Squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q0DAE8 | 7e-69 | SPL10_ORYSJ; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A0A9G6E5 | 2e-93 | A0A0A9G6E5_ARUDO; Sbp3 | ||||
STRING | Si006559m | 9e-82 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 |