PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05885.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 268aa    MW: 28354.9 Da    PI: 11.3677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05885.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031941123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ Cg++F++   L  H  +H
  Zmw_sc05885.1.g00040.1.am.mk 19 FECKTCGRRFPTFQALGGHRASH 41
                                  89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-81789No hitNo description
SMARTSM003550.111941IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-121943IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0531946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
PfamPF139121.3E-96691IPR007087Zinc finger, C2H2
SMARTSM003550.746789IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.646794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MMENELLLQR QQRGGGRLFE CKTCGRRFPT FQALGGHRAS HRRPGPYGFV TGIRKLEAAC  60
AGGPRVHGCP ICGAEFAVGQ ALGGHMRRHR GAAASAGTQA EICSSGDTAS ATVENRGEDC  120
VRGICLELNL ALPASCAKCQ KDAGLGSKRP GPRAPIVDGV LTESISEEKG RLRGGPSSWR  180
LLLAGGDGSY RRRRWGTRAG QRWSLGQDSG GEDGSWAGRE GCSALGWGKG TSRRRRRWGA  240
RAGRRRRSQG QDSGAGDGAL GLLGFGAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232246RRRRRWGARAGRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805950.11e-44zinc finger protein ZAT12-like
TrEMBLA0A1E5USH43e-45A0A1E5USH4_9POAL; Uncharacterized protein
STRINGAC206217.2_FGP0065e-43(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138