PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05880.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YA | ||||||||
Protein Properties | Length: 194aa MW: 21506.6 Da PI: 10.8385 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.5 | 9.6e-33 | 36 | 92 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF Zmw_sc05880.1.g00050.1.am.mkhc 36 EEPVYVNAKQYHGILRRRQSRAKAELEKKI-VKARKPYLHESRHQHAMRRARGNGGRF 92 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.4E-36 | 34 | 95 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.689 | 35 | 95 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.0E-28 | 37 | 92 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.0E-25 | 38 | 60 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 40 | 60 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.0E-25 | 69 | 92 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MLTTQAWLVL MELNLTQFQL DGLTHSRMPL PLEISEEPVY VNAKQYHGIL RRRQSRAKAE 60 LEKKIVKARK PYLHESRHQH AMRRARGNGG RFLNTKKIDN GTPNGKADPK KDTDKSVPNV 120 DSVFSNEVMP LCSSVGGRRG EAHSIFPQPN RVGGGGGTAS ITARSSIRLN AALLQLATAV 180 AAMEENYAWT AHRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-23 | 36 | 100 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304143.1 | 1e-57 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_021304146.1 | 1e-57 | nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A1B6QIQ0 | 3e-57 | A0A1B6QIQ0_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ia00780.1.p | 3e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8205 | 36 | 49 |