PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05827.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27960 Da PI: 10.3913 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83 | 1.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n +nrqvtfskRr g++KKA EL +LCda+v +i+fs +g+lye+ss Zmw_sc05827.1.g00040.1.am.mkhc 9 ERIDNRINRQVTFSKRRSGLMKKARELGILCDADVGLIVFSCSGRLYEFSS 59 69***********************************************96 PP | |||||||
2 | K-box | 75.2 | 1.8e-25 | 114 | 196 | 15 | 97 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +q+e++ L+++ +nLq ++RhllGe+L+ L++++Lq L++q+e sl++iR+kK++ll ++i +l +k +lq+en + Zmw_sc05827.1.g00040.1.am.mkhc 114 DFWQREVTTLRQQAQNLQLNNRHLLGEELSGLTVRDLQFLQNQVEMSLQSIRKKKEQLLADEIMQLNQKGLALQKENIE 192 68***************************************************************************** PP K-box 94 Lrkk 97 L+k+ Zmw_sc05827.1.g00040.1.am.mkhc 193 LKKE 196 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.796 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-31 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.21E-41 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 3.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.629 | 113 | 203 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.4E-24 | 114 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGKIAIER IDNRINRQVT FSKRRSGLMK KARELGILCD ADVGLIVFSC SGRLYEFSST 60 SMKSIIERYQ EAREENNSRL LNPVAEAKLR KLGDPSRPKE AWWRAVLLSA GYSDFWQREV 120 TTLRQQAQNL QLNNRHLLGE ELSGLTVRDL QFLQNQVEMS LQSIRKKKEQ LLADEIMQLN 180 QKGLALQKEN IELKKEASIA RRHKIELQKK LSAGKSTSSD GEEASGGSSD KAQDAFPMNH 240 PTIKSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_B | 1e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_C | 1e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_D | 1e-22 | 1 | 87 | 1 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817983.1 | 1e-103 | MADS-box transcription factor 25-like | ||||
Swissprot | Q84NC5 | 3e-97 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A2S3HW57 | 1e-101 | A0A2S3HW57_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07457.1.p | 1e-111 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Publications ? help Back to Top | |||
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