PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05640.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 375aa    MW: 41799.5 Da    PI: 6.9037
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05640.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-093003381755
                                   HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   e ++k +yps++++  LA+++gL+ +q+ +WF N+R ++
  Zmw_sc05640.1.g00010.1.sm.mk 300 ETYYKWPYPSETQKVALAESTGLDLKQINNWFINQRKRH 338
                                   578899******************************885 PP
2ELK32.51.9e-11258279122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+Ll KYsgyL+sLkqE+s
  Zmw_sc05640.1.g00010.1.sm.mk 258 ELKHHLLMKYSGYLSSLKQELS 279
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.3E-888163IPR005540KNOX1
PfamPF037909.1E-1189112IPR005540KNOX1
PfamPF037901.6E-4140162IPR005540KNOX1
SMARTSM012561.4E-25170221IPR005541KNOX2
PfamPF037912.8E-22176219IPR005541KNOX2
SMARTSM01188570179199IPR005539ELK domain
PROSITE profilePS5121310.807258278IPR005539ELK domain
SMARTSM011887.1E-7258279IPR005539ELK domain
PfamPF037897.5E-10258279IPR005539ELK domain
PROSITE profilePS5007112.698278341IPR001356Homeobox domain
SuperFamilySSF466893.34E-19279354IPR009057Homeodomain-like
SMARTSM003892.1E-11280345IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-26283344IPR009057Homeodomain-like
CDDcd000863.14E-12290342No hitNo description
PfamPF059201.0E-14298337IPR008422Homeobox KN domain
PROSITE patternPS000270316339IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEEISHNHFG VGASAHGQHQ HNPWGSALSA VVAPPPPLTL NTAATGNSGA SSGGNNPVLQ  60
LANGGSLLDA CVKAKEPSSS SPYAGDVEAI KAKIISHPHY YSLLAAYLEC QKASPTLLLL  120
LLHEKLLLHL MSNMEHAACN CKLVGAPPEV SARLTAMAQE LEARQRTSLL GLGSATEPEL  180
DQFMEAYHEM LVKFREELTR PLQEAMEFMR RVESQLGSLS ISSRSLRNIL SSGSEEDQEC  240
SGGETQLPEV DAHGVDQELK HHLLMKYSGY LSSLKQELSK KKKKGKLPKE ARQKLLSWWE  300
TYYKWPYPSE TQKVALAEST GLDLKQINNW FINQRKRHWK PSEEMHYMMM DGYHTSNAFY  360
MDGHFFNEAG MYRFG
Functional Description ? help Back to Top
Source Description
UniProtBinds to RNA (PubMed:17965274). Possible transcription factor that regulates genes involved in development. Mutations in KN-1 alter leaf development. Foci of cells along the lateral vein do not differentiate properly but continue to divide, forming knots. May participate in the switch from indeterminate to determinate cell fates. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:17965274}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981913.10.0homeotic protein knotted-1
SwissprotP243450.0KN1_MAIZE; Homeotic protein knotted-1
TrEMBLA0A368SF910.0A0A368SF91_SETIT; Uncharacterized protein
STRINGPavir.J00864.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Publications ? help Back to Top
  1. Lowe B,Mathern J,Hake S
    Active Mutator elements suppress the knotted phenotype and increase recombination at the Kn1-O tandem duplication.
    Genetics, 1992. 132(3): p. 813-22
    [PMID:1334895]
  2. Sinha N,Hake S
    Mutant characters of knotted maize leaves are determined in the innermost tissue layers.
    Dev. Biol., 1990. 141(1): p. 203-10
    [PMID:2391001]
  3. Chen H,Jackson D,Kim JY
    Identification of evolutionarily conserved amino acid residues in homeodomain of KNOX proteins for intercellular trafficking.
    Plant Signal Behav, 2014. 9(3): p. e28355
    [PMID:24603432]
  4. Sinha NR,Williams RE,Hake S
    Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
    Genes Dev., 1993. 7(5): p. 787-95
    [PMID:7684007]
  5. Greene B,Walko R,Hake S
    Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.
    Genetics, 1994. 138(4): p. 1275-85
    [PMID:7896105]
  6. Mathern J,Hake S
    Mu element-generated gene conversions in maize attenuate the dominant knotted phenotype.
    Genetics, 1997. 147(1): p. 305-14
    [PMID:9286690]