PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05606.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 301aa MW: 34367.5 Da PI: 7.1651

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05606.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.5	9.6e-48	66	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekew.yfFskrdkkyatgkrknr 76 lppGfrF Ptdeel+ +yL++k+ + +++ +i+++d+y+++PwdLp +++++ +++e+ yfF+++ +ky++g r++r Zmw_sc05606.1.g00020.1.am.mk 66 LPPGFRFFPTDEELIIFYLARKAVDASFTS-ATIRDIDLYSFDPWDLPcQELQEtgdGQHECcYFFCTKGSKYSSGVRARR 145 79***********************998.77**********9654443333444556************** PP NAM 77 atksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 at+sgyWk+tgkdk+v+s+ g+lvg+kktLvfy grap+gekt Wvmhey+l Zmw_sc05606.1.g00020.1.am.mk 146 ATRSGYWKSTGKDKAVYSSaaAGRLVGTKKTLVFYGGRAPRGEKTGWVMHEYAL 199 **************9888899*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-52	58	223	IPR003441	NAC domain
PROSITE profile	PS51005	51.807	66	223	IPR003441	NAC domain
Pfam	PF02365	1.3E-25	67	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTSPRLGNVL HHESPQAPHV TLNDQLFAVI KWTSSYLRCR VDRSSLRKFV CTRMQVEHHK 60 RRVERLPPGF RFFPTDEELI IFYLARKAVD ASFTSATIRD IDLYSFDPWD LPCQELQETG 120 DGQHECCYFF CTKGSKYSSG VRARRATRSG YWKSTGKDKA VYSSAAAGRL VGTKKTLVFY 180 GGRAPRGEKT GWVMHEYALG DGSSSVLRRG AQSGWVICRA LMKDEDPSRD RKPETEETMQ 240 SHDADYFLPE LLECDDDRYN EPLNRSGEAQ DTSGVLDRRA EMSDASVDSV LLCGFYWNYD 300 F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-41	66	223	20	168	NAC domain-containing protein 19
3swm_B	1e-41	66	223	20	168	NAC domain-containing protein 19
3swm_C	1e-41	66	223	20	168	NAC domain-containing protein 19
3swm_D	1e-41	66	223	20	168	NAC domain-containing protein 19
3swp_A	1e-41	66	223	20	168	NAC domain-containing protein 19
3swp_B	1e-41	66	223	20	168	NAC domain-containing protein 19
3swp_C	1e-41	66	223	20	168	NAC domain-containing protein 19
3swp_D	1e-41	66	223	20	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683498.1	5e-74	NAC domain-containing protein 100
Swissprot	Q9FLJ2	9e-49	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1E5UJH1	3e-78	A0A1E5UJH1_9POAL; NAC domain-containing protein 100
STRING	Si014973m	2e-75	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14765	21	22

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]