PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05479.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 813aa MW: 91539.3 Da PI: 10.1827 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.3 | 3.8e-15 | 1 | 77 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 ++p kf++++++ + e + l+ +sg++W++ l +k++++ +l +GW +F ka++L+e+D +vF+ ++ s+f +v+vf+ Zmw_sc05479.1.g00040.1.am.mk 1 SIPEKFVRNFKITE-E--AVDLKVTSGETWRIIL--EKRDNELYLMSGWMDFSKAQELRENDLLVFTCRNErSSF--NVQVFE 76 69*****8887664.4..599999**********..*******************************65444666..999997 PP S CS B3 99 k 99 + Zmw_sc05479.1.g00040.1.am.mk 77 E 77 6 PP | |||||||
2 | B3 | 41.8 | 1.9e-13 | 191 | 289 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f++vl +s+ ++ + +++p a++h +++s++++l+ ++ +sW+v++ y +s r++ +Fv++n+L+egD+ Zmw_sc05479.1.g00040.1.am.mk 191 FVTVLQKSHCQRRnNSMTIPSGLAADHL--EARSQDIILRRPNRkESWTVRY-YYTSSHRCIQNLQFFNFVRENKLREGDV 268 6667777776665588*********996..357889*****55549******.777777777777799************* PP EEEEE-SS.SEE..EEEEE-S CS B3 80 vvFkldgr.sefelvvkvfrk 99 ++F+l++ ++ +++v+v+r+ Zmw_sc05479.1.g00040.1.am.mk 269 CLFELVKGaRRVTMTVHVVRR 289 ****99877999*****9997 PP | |||||||
3 | B3 | 51.1 | 2.5e-16 | 391 | 474 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +rl++p kf ++ ++ + +k +l+ +sg+ W v + +k++++ +t+GW +F+ a+gL+e+D +vF+++g+++f Zmw_sc05479.1.g00040.1.am.mk 391 FA--QRLSIPQKFGNALTLNANATKRFSLKAPSGELWIVGV--TKHGDELCFTSGWGGFAVAHGLQENDLLVFTRSGKRSF 467 33..57********99999999999****************..*******************************8877777 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 v+vf++ Zmw_sc05479.1.g00040.1.am.mk 468 --DVMVFDA 474 ..8999886 PP | |||||||
4 | B3 | 32 | 2.2e-10 | 607 | 692 | 18 | 99 |
--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..E CS B3 18 lpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelv 93 l k+++++ ++ +s ++ l ++ ++W v++ y +++ r + + W +Fv++n+L+ D++vF+l+ + +++++v Zmw_sc05479.1.g00040.1.am.mk 607 LQKSHMNRKNNRLMRSHEVLLLRpgRKEQKWHVRY-YHGSGTRGFGCRRWVKFVRDNRLRRDDVCVFELVkkSGaRRTTMV 686 55666655543444556666666235569******.6666666666679*******************8833234566777 PP EEEE-S CS B3 94 vkvfrk 99 v+v+rk Zmw_sc05479.1.g00040.1.am.mk 687 VHVVRK 692 777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0025 | 1 | 78 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.113 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-11 | 1 | 77 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.45E-14 | 1 | 75 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-14 | 1 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-12 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-17 | 186 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-19 | 186 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.86E-14 | 189 | 288 | No hit | No description |
SMART | SM01019 | 6.0E-8 | 191 | 290 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-12 | 191 | 289 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.743 | 192 | 290 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-19 | 377 | 477 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-19 | 378 | 477 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.816 | 380 | 475 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.95E-16 | 382 | 473 | No hit | No description |
SMART | SM01019 | 4.4E-10 | 383 | 475 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-13 | 393 | 474 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-14 | 596 | 692 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-11 | 596 | 692 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.42E-12 | 601 | 691 | No hit | No description |
SMART | SM01019 | 1.0E-4 | 603 | 693 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-8 | 621 | 692 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.883 | 624 | 693 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence Send to blast |
SIPEKFVRNF KITEEAVDLK VTSGETWRII LEKRDNELYL MSGWMDFSKA QELRENDLLV 60 FTCRNERSSF NVQVFEESGC VKMPSLFGPN MCRHFSETAG RRAEHYSLSD SDDTTMPSQL 120 VGCPRDACTS KKRGREPDSP NSSSCHVKEE ESDGMYADSK YYYSRFANQL TNDEKEEVLG 180 LAPVGRDNPV FVTVLQKSHC QRRNNSMTIP SGLAADHLEA RSQDIILRRP NRKESWTVRY 240 YYTSSHRCIQ NLQFFNFVRE NKLREGDVCL FELVKGARRV TMTVHVVRRK VQGRGSGHGG 300 SIQACQVSPN PVLANTLASS SLTSSRRTEI SERKNKARTL SLSSSSSDTS IRCAYFPEMD 360 RQGCASCQKW RDHRSQDASR TRFIKLMTRD FAQRLSIPQK FGNALTLNAN ATKRFSLKAP 420 SGELWIVGVT KHGDELCFTS GWGGFAVAHG LQENDLLVFT RSGKRSFDVM VFDASGCEKV 480 SSFFMLGEGD PCRRKGFGGV KMGGQRAEHC GLSDSDDDAG TPLRLVESAR KASASKKKST 540 AGRTNPGGES TESPDSSHEE EQSDDRRAGS NCCYYSRSAS VLTEDEREEA LSLVSIRPGN 600 PAFVTVLQKS HMNRKNNRLM RSHEVLLLRP GRKEQKWHVR YYHGSGTRGF GCRRWVKFVR 660 DNRLRRDDVC VFELVKKSGA RRTTMVVHVV RKRNGRFVLL VRRKEVPWES SQQARAVAPG 720 CAVSRAITAA RVTGDPIIAA RGLRTQWRAA ADAGAGRRTA ARTVREAEPR HAMARVLEVD 780 EKVETEMGRA RQRRRRTKGA GQQESNLLED RGI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808341.1 | 1e-120 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 2e-95 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A3L6RDD8 | 0.0 | A0A3L6RDD8_PANMI; B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |