PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05463.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 199aa    MW: 21494.7 Da    PI: 7.1242
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05463.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.6e-31105163159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDg++WrKYG+K vk+s++pr+YYrCt  gC vkk+ver+++dp++v++tY g Hnh 
  Zmw_sc05463.1.g00030.1.sm.mkhc 105 LDDGFKWRKYGKKAVKNSPNPRNYYRCTADGCGVKKRVERDSDDPRYVVTTYDGVHNHA 163
                                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-3290165IPR003657WRKY domain
SuperFamilySSF1182908.89E-2897165IPR003657WRKY domain
PROSITE profilePS5081131.536100165IPR003657WRKY domain
SMARTSM007743.1E-35105164IPR003657WRKY domain
PfamPF031063.3E-24106162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAASLGLNPE AFFNPCSSYS AASSPFVAAD YTPSFPAGGL VDAGFDVPAE LDVHRLFDFE  60
HSPAASVFAD AGGEDGHNEQ KMRYYGGDEK KRRIGFRTRS QVEILDDGFK WRKYGKKAVK  120
NSPNPRNYYR CTADGCGVKK RVERDSDDPR YVVTTYDGVH NHASPAAVAQ YGGGGAGFYS  180
PLHSGSPPAN SYSSGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-2895166778Probable WRKY transcription factor 4
2lex_A8e-2895166778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.11e-72probable WRKY transcription factor 50
TrEMBLA0A1E5VP702e-71A0A1E5VP70_9POAL; Putative WRKY transcription factor 50
STRINGSb09g005700.15e-72(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206