PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05406.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 519aa    MW: 57523.7 Da    PI: 4.8465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05406.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.83.4e-852024542256
                            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                     ++lL++cA a+s+ ++ +aqa++++l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a
  Zmw_sc05406.1.g00030.1.sm.mkhc 202 KQLLFDCAMALSEYNTDEAQAIITELRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSA 277
                                     589*****************************************************************9...89999** PP

                            GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skee 157
                                     +++++e++P++++++++aN  Ilea +geervHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      
  Zmw_sc05406.1.g00030.1.sm.mkhc 278 MQILFEICPCFRLGFMAANYGILEACKGEERVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrPIGG 356
                                     ***********************************************************************99878899 PP

                            GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236
                                     l+ +g+rL+k+Ae +gv+fef++ v  ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vksl+P
  Zmw_sc05406.1.g00030.1.sm.mkhc 357 LRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKSLQP 434
                                     ***********************.799**************************************************** PP

                            GRAS 237 kvvvvveqeadhnsesFler 256
                                     k+v++veq+a++n+++F +r
  Zmw_sc05406.1.g00030.1.sm.mkhc 435 KLVTLVEQDANTNTAPFPTR 454
                                     *****************998 PP
2GRAS52.78.4e-17454519308374
                            GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     r e ++kWr+r+++aGF+p p+++++++++++ll+ + ++ y+ +e++g l +gW +++L++ SaW+
  Zmw_sc05406.1.g00030.1.sm.mkhc 454 RYEVAGKWRARMTMAGFRPCPFNSNVVSEIRSLLKSYCDR-YKFQEDHGGLHFGWGEKSLIVSSAWQ 519
                                     88999*********************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.635175519IPR005202Transcription factor GRAS
PfamPF035141.2E-82202454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSFVRRVDPS TAYSDNLYVH KFAAPSSNFA SRRFGSDTQL VRYGPEPYNT EYGHMSFIGP  60
ASAEFQNSLC SQQVSLAPYH LTADGQSTTV ADAQCSSCSD AAKDSPVLSN VSQQNTQSVS  120
DSQSSGIEVE FDEDEMRLKL QALEHALLDD GDDFFFEISQ TDRVNDEWAD PMKTVLTPNS  180
PKDSESSVSC AVSNNGATRT PKQLLFDCAM ALSEYNTDEA QAIITELRQM VSIQGDPSQR  240
IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYGIL  300
EACKGEERVH IIDFDINQGS QYITLIQFLK NNANKPRHLR ITGVDDPETV QRPIGGLRVI  360
GQRLEKLAED CGVSFEFRAV GANIGDVTPA MLDCRPGEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK SLQPKLVTLV EQDANTNTAP FPTRYEVAGK WRARMTMAGF RPCPFNSNVV  480
SEIRSLLKSY CDRYKFQEDH GGLHFGWGEK SLIVSSAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-3920851826378Protein SCARECROW
5b3h_A6e-3920851825377Protein SCARECROW
5b3h_D6e-3920851825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ31e-158SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA5HJS40.0A5HJS4_9POAL; Scarecrow
STRINGPavir.J20385.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]