PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05365.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 25635.8 Da PI: 6.4195 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.5e-10 | 89 | 137 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Zmw_sc05365.1.g00030.1.sm.mkhc 89 NNHSLAERLRRKKISERMKLLQDLVPGC----HKITGKAVMLDEIINYVQSLQ 137 58*************************9....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-16 | 84 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.60E-12 | 84 | 141 | No hit | No description |
PROSITE profile | PS50888 | 15.466 | 86 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-16 | 86 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-8 | 89 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 92 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MLGVGTALST SQVHSDARSS SSSESSIKFH GATVGDQLTE GSSPQERNSM EEGNKKISPK 60 LQSKEDSSDG DGTKDDYVHV RAKRGQATNN HSLAERLRRK KISERMKLLQ DLVPGCHKIT 120 GKAVMLDEII NYVQSLQRQV EMMLSQDRHI AFYGADPGSI SLVSQYNPGI VPPEMMCGVS 180 NPLDVLQGTI HNVSAVNQMP AMWEGLHMPH MNFNPGVAAD SGGTNDADRT MIIESS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131789.1 | 1e-108 | uncharacterized protein LOC100193160 | ||||
Refseq | XP_008647764.1 | 1e-108 | transcription factor bHLH62 isoform X1 | ||||
Refseq | XP_008647791.1 | 1e-108 | transcription factor bHLH62 isoform X1 | ||||
Refseq | XP_020395971.1 | 1e-108 | transcription factor bHLH62 isoform X1 | ||||
Refseq | XP_020396007.1 | 1e-108 | transcription factor bHLH62 isoform X1 | ||||
TrEMBL | A0A1D6L304 | 1e-108 | A0A1D6L304_MAIZE; Transcription factor bHLH62 | ||||
STRING | GRMZM2G092091_P01 | 1e-108 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6033 | 36 | 50 |