PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05363.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 1038aa    MW: 111599 Da    PI: 9.8457
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05363.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.9e-1990184899
                                   -HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                            B3   8 sdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                   sd+++ g +++p+ +ae          +++ +   + ++d +g +W++++i+r++++r++lt+GW++Fv+ ++L +gD++v
  Zmw_sc05363.1.g00020.1.am.mk  90 SDANNGGGFSVPRFCAEGVfpeldyqAEPPVQ--NVFVRDVHGVEWKFRHIFRGTPRRHLLTTGWSQFVNNKKLIAGDSIV 168
                                   78889999****99998889*99885445445..6********************************************** PP

                                   EEE-SSSEE..EEEEE-S CS
                            B3  82 Fkldgrsefelvvkvfrk 99 
                                   F   + ++++ +v+++r+
  Zmw_sc05363.1.g00020.1.am.mk 169 FL--RGEDGQIRVGLRRA 184
                                   **..4499999***9986 PP
2Auxin_resp105.75.5e-35238321183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWr 80 
                                   aa+ a+ +++Fevv++Prast+eF+v+++ v +a++v++++GmRfkmafe+edss++++ +G +++v+ +dp rWp+S Wr
  Zmw_sc05363.1.g00020.1.am.mk 238 AAKLAAVGQPFEVVHYPRASTPEFCVRAAAVTAAMQVPWCPGMRFKMAFESEDSSRISWfMGSISDVQPADPARWPQSLWR 318
                                   6889999************************************************************************** PP

                    Auxin_resp  81 sLk 83 
                                   +L+
  Zmw_sc05363.1.g00020.1.am.mk 319 LLQ 321
                                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.7E-1385185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-2988186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2589189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-1689183No hitNo description
PfamPF023621.5E-1790184IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801123185IPR003340B3 DNA binding domain
PfamPF065077.2E-30238321IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MLSFAELAGG GGNSQVGAVD KQLWLACAGP MCNVLPGHAE QASADVDFSD VRVPPLVPCR  60
VAEVFAKMRL VPLRLGEPAV DEGEAAAEAS DANNGGGFSV PRFCAEGVFP ELDYQAEPPV  120
QNVFVRDVHG VEWKFRHIFR GTPRRHLLTT GWSQFVNNKK LIAGDSIVFL RGEDGQIRVG  180
LRRAKRVFSI LVNDEGSISP SGWDPYLGLA RGNATSSSSF GGGFRPRGNI PPEDVLAAAK  240
LAAVGQPFEV VHYPRASTPE FCVRAAAVTA AMQVPWCPGM RFKMAFESED SSRISWFMGS  300
ISDVQPADPA RWPQSLWRLL QVTWDEAKVL KNVKRVCPWL VELVSSMPNL HLPPFSPGGK  360
RARYTGFVTF PESSAAAGIQ GARHAQFASS FSDLHIGNLQ QNLLLSGIRL PTDRHAPSAP  420
TISLDLTVGS PTARQDAPCA PSPGAATARQ DAPCAPSPGA KKADDVKPLG IMLFGQRILT  480
EQQIKDANSS GGLTSPAAAK TKTDSDAEKA PNASEGFRSP SGVIQRSPTK NDSLLSSLRL  540
STRDYGSKPP SESGQEPGQC KAFVESETVG RNLDLSTLGS FEGLYAHLSA MFSIDHDELR  600
GHLLHSTASG DVRHVGDEPS QRVRETGAED HETDPKLVVK EHQNANRSGI DGRNSSPTRD  660
ADRYLPKSKG CQRRREPHHS STGLNRRTTL RGDKDGSITL PVPGQQLGRL LCLEGVLGLV  720
LVTTTDAGSA RRRKARPSGS VRTDEALAQG CQSTQARAIN IRAPVAAALW EHHACCRWSS  780
TRLTQRRLLF GRWRDALVLL ATTTAAKPGK QKRGMVDVEG SNDMGVGGVS VEKSASVRCS  840
GAIAGAPGPA ARGYYAPCFQ RPRPRQATKQ ATRRGDTRPA RRRRACRDQR RRPGLSSFAA  900
IALSRSLDRR RGGFGSGLVN PAGLAPVVPG ASDCGLVTCS RPCFFAVSFQ ASSKASFLLA  960
CLEWNTPFAR PGIRMDACLS LASLLLLLLP RRGLGAASYC NSHPEPCIIM DFARRNVVHF  1020
SRVCTMAEAF QAPLQPSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-53134233388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633845.10.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A0E0PBN00.0A0A0E0PBN0_ORYRU; Auxin response factor
STRINGORUFI04G20430.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152