PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05319.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 519aa MW: 57280.8 Da PI: 10.4336 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.7 | 1.4e-20 | 151 | 244 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 ffkvl + ++rl +p +f++++ ++ k+ s+ tle +sgr+W++ + r++ +++++t+GW++Fv+++ Zmw_sc05319.1.g00040.1.am.mk 151 FFKVL---MGDFRKRLKIPPSFCKHIpweasrraKSLKQASMAATLEGPSGRTWRMVI--RRSAEGTFFTAGWSKFVRDQA 226 66666...5566778********888*****9996666799*****************..********************* PP --TT-EEEEEE-SSSEE. CS B3 74 LkegDfvvFkldgrsefe 91 L+e +f+vF++dg+++f+ Zmw_sc05319.1.g00040.1.am.mk 227 LRELEFLVFRYDGNTRFT 244 ************998884 PP | |||||||
2 | B3 | 51.8 | 1.5e-16 | 418 | 504 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +++ +v s ++++p f ++h ++e ++++l+d+sg+ W v +i ++++r l++GW F++ n L+egD +vF+l+ Zmw_sc05319.1.g00040.1.am.mk 418 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPSGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELV 493 67788999999********9995..345679***************4.444455..9**********************99 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 ef +v++fr Zmw_sc05319.1.g00040.1.am.mk 494 AAAEF--RVHIFR 504 86666..999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-21 | 146 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-22 | 147 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 148 | 251 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.37E-19 | 149 | 244 | No hit | No description |
Pfam | PF02362 | 7.5E-18 | 151 | 245 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-13 | 151 | 251 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-23 | 407 | 504 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 407 | 504 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.49E-24 | 412 | 504 | No hit | No description |
PROSITE profile | PS50863 | 13.958 | 414 | 506 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-9 | 414 | 506 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-15 | 417 | 504 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MGKRRDTVVG AGRVALLEMA PGPIAFPPEN EQEPRGLARS EVRAVDVPPN PWAFGRGLVS 60 VATTRNSLPF APPSKAELYP RFFSPVGSRL FRLSSFLAEL AGFAAPQAPE AGAASPGIPV 120 FRCLLPQPRA CDQGVVQAGS PWASGERRPH FFKVLMGDFR KRLKIPPSFC KHIPWEASRR 180 AKSLKQASMA ATLEGPSGRT WRMVIRRSAE GTFFTAGWSK FVRDQALREL EFLVFRYDGN 240 TRFTAMAFGT SGCEREDLML AAPRPPGRKR GRPSAASRGV ARAAKKNKES VGMELVPYRA 300 PSAGPSDHTC SEDTPELAVG PVKTEVPDAD ELALCVAIPA PPSAARGPGA HQVDLAHAAK 360 TRSIHDDLTA LEDDIPESVR RYKGYVSRRR PVTGAERQRA MELAYAFRSS LPYCVMRMST 420 MHVYYSFMMR FPTGFSRQHL PRERTDVVLR DPSGKAWVVL YIPNTRDRLS RGWCAFARGN 480 CLEEGDYCVF ELVAAAEFRV HIFRVVEPPV PAVRLRSSA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969798.1 | 0.0 | B3 domain-containing protein Os01g0723500 isoform X1 | ||||
Swissprot | Q8S2E6 | 1e-179 | Y1235_ORYSJ; B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | C5XIE6 | 0.0 | C5XIE6_SORBI; Uncharacterized protein | ||||
STRING | Sb03g033260.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12792 | 31 | 35 |