PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05318.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 538aa MW: 57381.1 Da PI: 8.3891

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05318.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.2	8.7e-18	45	94	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Zmw_sc05318.1.g00070.1.am.mk 45 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAARAIKG 94 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.3E-31	45	102	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-35	45	108	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-20	45	102	IPR016177	DNA-binding domain
Pfam	PF00847	2.5E-11	45	94	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.537	45	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.2E-10	46	57	IPR001471	AP2/ERF domain
CDD	cd00018	3.18E-28	46	102	No hit	No description
PRINTS	PR00367	4.2E-10	68	84	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MDDAHEPTSP TSASSTSSSS SSSSSLVGAA PKKRPRNREG LRHPTYRGVR MRSWGKWVSE 60 IREPRKKSRI WLGTFATAEM AARAHDVAAR AIKGRAAHLN FPGQAHLLPR PTSAAPKDVQ 120 AAAALAAAAA DFPSDANAKS PESSSSSSDD ASVSFPPPPP PLQREDALPD PDESLFDLPD 180 LLVDLRCGPS SCGASWAVDD DVAGGAAFRL EEPLIGFERA GHPVSLSLSD SEQAPPPAHH 240 STQQERSYNL PMPLDQTLSS AGDVRRGLVE KLKTTLMRLS SEFGRSAPLP RAPGCGFPCP 300 VATVPATSNA ARARERPQAD AARCLPVGFR ARDPVSQSPV RRCDASWRRH APRPGSFCFV 360 PLRDKDDDDS WRLRDPDWPQ PRLPRTETQS DREIAASSIP GKITLTHAAA TDLPGRSVSW 420 SAGHSCADDG VKNCVLAPPA GDCCGSPGVL RLVTSVTCWA KALSEVSPTK STRQAETRQT 480 HARAPGWQAC ASQSWWYGDT DHVVRALHPA GFGRTRPALE HSYASAVPVP GAGTLTPP

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MDDAHEPTSP TSASSTSSSS SSSSSLVGAA PKKRPRNREG LRHPTYRGVR MRSWGKWVSE  60
IREPRKKSRI WLGTFATAEM AARAHDVAAR AIKGRAAHLN FPGQAHLLPR PTSAAPKDVQ  120
AAAALAAAAA DFPSDANAKS PESSSSSSDD ASVSFPPPPP PLQREDALPD PDESLFDLPD  180
LLVDLRCGPS SCGASWAVDD DVAGGAAFRL EEPLIGFERA GHPVSLSLSD SEQAPPPAHH  240
STQQERSYNL PMPLDQTLSS AGDVRRGLVE KLKTTLMRLS SEFGRSAPLP RAPGCGFPCP  300
VATVPATSNA ARARERPQAD AARCLPVGFR ARDPVSQSPV RRCDASWRRH APRPGSFCFV  360
PLRDKDDDDS WRLRDPDWPQ PRLPRTETQS DREIAASSIP GKITLTHAAA TDLPGRSVSW  420
SAGHSCADDG VKNCVLAPPA GDCCGSPGVL RLVTSVTCWA KALSEVSPTK STRQAETRQT  480
HARAPGWQAC ASQSWWYGDT DHVVRALHPA GFGRTRPALE HSYASAVPVP GAGTLTPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-17	40	107	9	77	Ethylene-responsive transcription factor ERF096