PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05274.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 413aa MW: 42913.6 Da PI: 9.5905

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05274.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	80	140	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt GG+lrnvPvGgg+r+nk+ss Zmw_sc05274.1.g00050.1.am.mk 80 PERALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTSGGSLRNVPVGGGCRRNKRSS 140 68899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-34	64	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-33	82	138	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.721	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MVFTYLDPPI WNNQQGQQPR ASGGGDAPLL PVGPAAATGM APEATGLPSS STAAASAAGA 60 AQTRPNSMAE RARVARMPQP ERALKCPRCD STNTKFCYYN NYSLSQPRHF CKACRRYWTS 120 GGSLRNVPVG GGCRRNKRSS KSSSAGASSS SKPSSSARQL PSGPSSTPST AGGVSSGIIP 180 SGLNSLSHQY LPFLGSMQQP GGNLGLAFSA GLPPLGMQHV DTGDQFPVAS GGASLDQWRV 240 QQQQQQHQVQ FPFLAGGVLD LQPRPQMYQL GLEANRVSSG SPASAFTLGA LGQANGTPAR 300 QEGTMKLDLD DSKGQEMSLQ RQYMAALRHG DGIWDGNAGG SGGDGGGNDG ATWPMNIPGF 360 RSSSTGDGGD HMASDGGGAA RRQAEACVAP HAIGRPGHQR QRVLDATYQL TIM

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MVFTYLDPPI WNNQQGQQPR ASGGGDAPLL PVGPAAATGM APEATGLPSS STAAASAAGA  60
AQTRPNSMAE RARVARMPQP ERALKCPRCD STNTKFCYYN NYSLSQPRHF CKACRRYWTS  120
GGSLRNVPVG GGCRRNKRSS KSSSAGASSS SKPSSSARQL PSGPSSTPST AGGVSSGIIP  180
SGLNSLSHQY LPFLGSMQQP GGNLGLAFSA GLPPLGMQHV DTGDQFPVAS GGASLDQWRV  240
QQQQQQHQVQ FPFLAGGVLD LQPRPQMYQL GLEANRVSSG SPASAFTLGA LGQANGTPAR  300
QEGTMKLDLD DSKGQEMSLQ RQYMAALRHG DGIWDGNAGG SGGDGGGNDG ATWPMNIPGF  360
RSSSTGDGGD HMASDGGGAA RRQAEACVAP HAIGRPGHQR QRVLDATYQL TIM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791451.1	1e-137	dof zinc finger protein DOF5.1-like isoform X2
Swissprot	Q9M2U1	2e-47	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	A0A2S3IRW0	1e-136	A0A2S3IRW0_9POAL; Uncharacterized protein
STRING	Pavir.J14669.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32