PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc05273.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 521aa MW: 56908.9 Da PI: 5.8245 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.1 | 9.3e-13 | 9 | 57 | 37 | 87 |
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 k+++ g+ rs+k+Ckek+en+ k+y+++ke + +r++++s +++f++lea Zmw_sc05273.1.g00080.1.sm.mkhc 9 KLAALGYVRSAKKCKEKFENVDKYYRRTKEARAGRQDGKS--YRFFSELEA 57 67899*****************************866665..******985 PP | |||||||
2 | trihelix | 107.6 | 8.3e-34 | 283 | 368 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW+k+ev+aLi++r+e++e+ ++ +k+plWe++++ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tc Zmw_sc05273.1.g00080.1.sm.mkhc 283 RWPKEEVQALIRLRTEKDEQCHDTGSKGPLWEDIAAGMRRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PQDSKTC 360 8********************************************************************97.9****** PP trihelix 80 pyfdqlea 87 pyf+ql+a Zmw_sc05273.1.g00080.1.sm.mkhc 361 PYFHQLDA 368 ******85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.9E-9 | 8 | 58 | No hit | No description |
SMART | SM00717 | 3.0E-5 | 280 | 342 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-5 | 281 | 339 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.898 | 282 | 340 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.74E-5 | 282 | 352 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.8E-22 | 282 | 369 | No hit | No description |
CDD | cd12203 | 2.31E-27 | 283 | 347 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 521 aa Download sequence Send to blast |
MAAAAALQKL AALGYVRSAK KCKEKFENVD KYYRRTKEAR AGRQDGKSYR FFSELEALHA 60 AAPQQRRQQA SGQADPQPSA PMSWTTAPAA LEPPGAGTPE LSFSSMSGSE SESDDDEFDV 120 DGAEDHGKGD GDAAVCDKEM MALFEGMMRQ VTEKQDAMQR VFLDTLERWE AERTAREEAW 180 RRQEVARMNR EREQLAKERA SAASRDAALI AFLQRVGGGG QPVRLPPPSA VAVPTPMPDR 240 APPSPRQDAA NTSPLQVVSV PSKPEESWAW AGGESSGGST SSRWPKEEVQ ALIRLRTEKD 300 EQCHDTGSKG PLWEDIAAGM RRIGYNRSAK RCKEKWENIN KYFKKVKESN KRRPQDSKTC 360 PYFHQLDAMY RKKRFAGRPG SGAASEAHLS TVTASSQTSP SQRELEGKSS NDAGKQNIIG 420 AANVHALPSE MASAATILGD GAKNKKPEDT ETETNMQLQQ QHEFAADETD SDDMVMEGLY 480 TDEGNDGDRM QYKTGSSGNT PAPTETAAAA TSSASTFLAV Q |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798824.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
TrEMBL | A0A3L6QGT4 | 0.0 | A0A3L6QGT4_PANMI; Trihelix transcription factor GTL1-like isoform X1 | ||||
STRING | Si016578m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |