PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05259.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 603aa MW: 64269.4 Da PI: 7.0559

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05259.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	255.2	2.3e-78	251	602	3	364
GRAS 3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 +L e+Ae ++gd +a+Larl+++ a +g+p++R a+yf+eAL+ l+ ++ +p++ ++ ++ ++ a Zmw_sc05259.1.g00080.1.am.mk 251 GQLAEAAELAEAGDVLGSRAILARLNNRfpaAPTAGTPLHRCAFYFKEALRVALST---TTG-D-APTAPTPVDVLLKIGA 326 689**********************999555566**************99...222.2.45555567899* PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....ske 156 +k+fsevsP+++f+h+t+ qa+l+++ g+ ++H++Df+i+ G QW++L+q+La+R+ + sl++T+++s s+ Zmw_sc05259.1.g00080.1.am.mk 327 YKAFSEVSPVVQFAHFTCVQAVLDELGGAGCIHVLDFEIGVGDQWASLMQELAQRR-PGTSLKVTALVSTPSSsphhrLPL 406 **************************************************95.558**988555567766678 PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 el+ ++e+L++fA+ +vpf+f v+ +le+ ++ e L++ g+a+aV+l + +++s +L+lv++l + Zmw_sc05259.1.g00080.1.am.mk 407 ELQLVQENLSSFAADARVPFQFAVF---SLESTDPtEILAMAAGDAIAVHLPVGCSVHT---PAMPS----ILHLVRRLGA 477 99******************8...566665515578888*****9776654...56666....****** PP GRAS 237 kvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 k+vv v++ +d+ ++ +F++++++a++ ++ l++sl+a s + k+Er l++++i+++v + + + + Wr Zmw_sc05259.1.g00080.1.am.mk 478 KLVVTVDRSCDRrSELPFAAHLFQAFQSCVFLLESLDAV---GSTDSDKIERLLIQPRIESCVVSKYRGAI-AGDRTPPWR 554 ********8999****************998...799999****************955.556699* PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 + l +aGF pv+ s++a++qa++ll+kv+++g+rve++ gsl+l W++ Zmw_sc05259.1.g00080.1.am.mk 555 ALLASAGFVPVQASSFAEAQADSLLKKVPVRGFRVEKRAGSLLLHWQR 602 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.841	223	592	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-76	251	602	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MLRFLDFHRI SLAQAPGWKG VLLCCGCTAC RLSHSASQLS PSLCRSHTRH TIPTGGVGQA 60 DSIYEKGWNQ AQSKGWGGTC SSTLFSSVLD HHPSAKPKPL PPRSASTLSS PLTDVAALAG 120 ATNAKSVSPP PPAWPPGDDD GAPGPGGKED TSWIHHLPPL DHMSSQQQDN TFLHWIIGGD 180 VSTAQAMPSG VTEHHPVLAD SVLPHQPLPF PPPQPLMFHP SMDIAVTRHQ PTAAVLKPTK 240 PEEDDTAAAV GQLAEAAELA EAGDVLGSRA ILARLNNRFP AAPTAGTPLH RCAFYFKEAL 300 RVALSTTTGD APTAPTPVDV LLKIGAYKAF SEVSPVVQFA HFTCVQAVLD ELGGAGCIHV 360 LDFEIGVGDQ WASLMQELAQ RRPGTSLKVT ALVSTPSSSP HHRLPLELQL VQENLSSFAA 420 DARVPFQFAV FSLESTDPTE ILAMAAGDAI AVHLPVGCSV HTPAMPSILH LVRRLGAKLV 480 VTVDRSCDRR SELPFAAHLF QAFQSCVFLL ESLDAVGSTD SDKIERLLIQ PRIESCVVSK 540 YRGAIAGDRT PPWRALLASA GFVPVQASSF AEAQADSLLK KVPVRGFRVE KRAGSLLLHW 600 QRG

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MLRFLDFHRI SLAQAPGWKG VLLCCGCTAC RLSHSASQLS PSLCRSHTRH TIPTGGVGQA  60
DSIYEKGWNQ AQSKGWGGTC SSTLFSSVLD HHPSAKPKPL PPRSASTLSS PLTDVAALAG  120
ATNAKSVSPP PPAWPPGDDD GAPGPGGKED TSWIHHLPPL DHMSSQQQDN TFLHWIIGGD  180
VSTAQAMPSG VTEHHPVLAD SVLPHQPLPF PPPQPLMFHP SMDIAVTRHQ PTAAVLKPTK  240
PEEDDTAAAV GQLAEAAELA EAGDVLGSRA ILARLNNRFP AAPTAGTPLH RCAFYFKEAL  300
RVALSTTTGD APTAPTPVDV LLKIGAYKAF SEVSPVVQFA HFTCVQAVLD ELGGAGCIHV  360
LDFEIGVGDQ WASLMQELAQ RRPGTSLKVT ALVSTPSSSP HHRLPLELQL VQENLSSFAA  420
DARVPFQFAV FSLESTDPTE ILAMAAGDAI AVHLPVGCSV HTPAMPSILH LVRRLGAKLV  480
VTVDRSCDRR SELPFAAHLF QAFQSCVFLL ESLDAVGSTD SDKIERLLIQ PRIESCVVSK  540
YRGAIAGDRT PPWRALLASA GFVPVQASSF AEAQADSLLK KVPVRGFRVE KRAGSLLLHW  600
QRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-22	281	579	32	340	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468689.2	0.0	scarecrow-like protein 6
TrEMBL	A0A0A9H9V7	0.0	A0A0A9H9V7_ARUDO; Uncharacterized protein
STRING	BRADI1G78230.1	1e-175	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6723	29	54