PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc05246.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 429aa MW: 46390 Da PI: 9.503 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.6e-20 | 258 | 307 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g Zmw_sc05246.1.g00010.1.sm.mk 258 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 307 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.20E-32 | 257 | 315 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-22 | 258 | 315 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 258 | 316 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-37 | 258 | 321 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 258 | 315 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 259 | 307 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 259 | 270 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 281 | 297 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MLAWLRVHGP GLALLYKALA GRPLLPQRDA STHPRPPTNE EHHQATSHIL FHSTVRLSDL 60 SKPLGRRSDR QARTDAKKGP LHPSFHLVLM AAAIDMYKYN TGSTHQIPSA SDQELMKALE 120 PFITSASSSS SSSPYNYYSS PSSSITQDSF MSTPSYTSLA TPPLPTTDAT SSSSFSQLPP 180 LYSSPYAGQA TPSMTGPMGL THLSPAQIQQ IQAQFLLQQQ QQRGLHAAFL GPRVQPMKQS 240 GSPPRGALAA AGAAQSKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEDAALAYDK 300 AAFRLRGDMA RLNFPSLRRG GAHLAGPLQA SIDAKLTSIC QSLAGASSSK NGSPASDSAA 360 SSPESPKSSA STEEEEESVS AGSPPSPTFS PPVPEMAKLD FTEAPWDETE AFHLRKYPSW 420 EIDWDSILS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 254 | 315 | 1 | 63 | ATERF1 |
3gcc_A | 2e-21 | 254 | 315 | 1 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001183842.1 | 1e-149 | putative AP2/EREBP transcription factor superfamily protein | ||||
Refseq | XP_025807978.1 | 1e-149 | ethylene-responsive transcription factor ERF060-like | ||||
TrEMBL | A0A3L6RQH8 | 1e-153 | A0A3L6RQH8_PANMI; Ethylene-responsive transcription factor RAP2-4-like | ||||
STRING | GRMZM2G029323_P01 | 1e-149 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |