PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05245.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CPP

Protein Properties

Length: 363aa MW: 39132.9 Da PI: 10.0774

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05245.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	42.1	1.8e-13	155	192	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +kk CnC++s+Clk+YCeCfa+g++C+ C+C +C+N+ Zmw_sc05245.1.g00020.1.am.mkhc 155 KKKCCNCRNSRCLKLYCECFASGAYCDG-CNCINCFNNP 192 799***********************.******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.0E-15	154	194	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	15.646	155	220	IPR005172	CRC domain
Pfam	PF03638	8.6E-10	156	191	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAGKEPAGGG PHQRPPTPAV SSQPPVKKLV RQLDFNSAAM AGNPAMAAAA AAVSRALQPR 60 AAHVGLPHQQ HTRATVPLGV PQQMQHRGLP VLRPHQAVGH VPLPRMAVAV PVPQLRPTLV 120 QPVPRPPVSV PLSVKPESPN LRAKLYEGKD GTPTKKKCCN CRNSRCLKLY CECFASGAYC 180 DGCNCINCFN NPGNDVTRRE AIDATLERNP DAFRPKIGSS PHTNRNNNAM PDGSVPISQS 240 VHPPTLGPFK VTYRPLLADI VQPDDIKELC KLLVVVSGQA AKAYTDRKTQ EEKAAKTEDH 300 KPEERYSMAI KPEASAHLGQ VNGVSRVPYS KVDVPSVVQT FLQSSSSQPV TGHLDKRLKP 360 DKS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAGKEPAGGG PHQRPPTPAV SSQPPVKKLV RQLDFNSAAM AGNPAMAAAA AAVSRALQPR  60
AAHVGLPHQQ HTRATVPLGV PQQMQHRGLP VLRPHQAVGH VPLPRMAVAV PVPQLRPTLV  120
QPVPRPPVSV PLSVKPESPN LRAKLYEGKD GTPTKKKCCN CRNSRCLKLY CECFASGAYC  180
DGCNCINCFN NPGNDVTRRE AIDATLERNP DAFRPKIGSS PHTNRNNNAM PDGSVPISQS  240
VHPPTLGPFK VTYRPLLADI VQPDDIKELC KLLVVVSGQA AKAYTDRKTQ EEKAAKTEDH  300
KPEERYSMAI KPEASAHLGQ VNGVSRVPYS KVDVPSVVQT FLQSSSSQPV TGHLDKRLKP  360
DKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232361.1	1e-100	protein tesmin/TSO1-like CXC 5 isoform X1
Refseq	XP_010232362.1	1e-100	protein tesmin/TSO1-like CXC 5 isoform X2
Refseq	XP_010232363.1	1e-100	protein tesmin/TSO1-like CXC 5 isoform X3
Refseq	XP_010232364.1	1e-100	protein tesmin/TSO1-like CXC 5 isoform X4
TrEMBL	A0A3L6SJ42	1e-104	A0A3L6SJ42_PANMI; Protein tesmin/TSO1-like CXC 5 isoform X1
STRING	Pavir.Eb03237.1.p	1e-103	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP62313	2	2