PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05230.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 354aa MW: 38556.1 Da PI: 8.3322

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05230.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.2e-41	152	228	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h+vCe+hskap+v+v+gle+rfCqqCs+fh+lsefD+ krsCrrrL++hn+rrrk+q+ Zmw_sc05230.1.g00020.1.am.mkhc 152 CQVEGCKFDLSSAKNYHRKHRVCEAHSKAPKVIVNGLERRFCQQCSQFHALSEFDQIKRSCRRRLNDHNARRRKQQP 228 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.9E-33	145	213	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.624	149	226	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.05E-38	150	231	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.8E-31	152	225	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDWSQRGSML WDWENLSPIG ANSNDNPTIS LQAEPKFACF EDTGHESVHS SCGTFSSNSE 60 MGYCSSKSSI ASIDSSPKPR DTVELNFALV KVLGKGTDHK TALGKVDDAR SSPSSVIAVS 120 SGEPVIGLKL VTPTTTSTKK AKVAQTAQNV YCQVEGCKFD LSSAKNYHRK HRVCEAHSKA 180 PKVIVNGLER RFCQQCSQFH ALSEFDQIKR SCRRRLNDHN ARRRKQQPDA ISFGASRLST 240 MFYGIEASVA AANLNGAPDL QRALSLLSNN SADASSDQPI SQLHPALVTI ASSYNPVVQG 300 SSGLWQDGTA LDHEARFQAF DPVSNRSPIA APHQLHLLKL PAYDSSPSRY DQMN

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDWSQRGSML WDWENLSPIG ANSNDNPTIS LQAEPKFACF EDTGHESVHS SCGTFSSNSE  60
MGYCSSKSSI ASIDSSPKPR DTVELNFALV KVLGKGTDHK TALGKVDDAR SSPSSVIAVS  120
SGEPVIGLKL VTPTTTSTKK AKVAQTAQNV YCQVEGCKFD LSSAKNYHRK HRVCEAHSKA  180
PKVIVNGLER RFCQQCSQFH ALSEFDQIKR SCRRRLNDHN ARRRKQQPDA ISFGASRLST  240
MFYGIEASVA AANLNGAPDL QRALSLLSNN SADASSDQPI SQLHPALVTI ASSYNPVVQG  300
SSGLWQDGTA LDHEARFQAF DPVSNRSPIA APHQLHLLKL PAYDSSPSRY DQMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-27	152	225	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826432.1	1e-116	squamosa promoter-binding-like protein 3
Refseq	XP_025826439.1	1e-116	squamosa promoter-binding-like protein 3
Refseq	XP_025826447.1	1e-116	squamosa promoter-binding-like protein 3
Swissprot	A2YGR5	3e-74	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	3e-74	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A1E5VW92	1e-141	A0A1E5VW92_9POAL; Squamosa promoter-binding-like protein 12
STRING	Pavir.Aa03225.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3697	37	76

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]