PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05178.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 135aa    MW: 15515.9 Da    PI: 10.2703
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05178.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.4e-2554100248
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 
                                   rien   rqvtf+kRr+g+lKKA ELSvLCda + +iifs +gkly+
  Zmw_sc05178.1.g00040.1.am.mk  54 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAHIGIIIFSAHGKLYD 100
                                   8********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.5245105IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-2545105IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-3545104IPR002100Transcription factor, MADS-box
CDDcd002654.79E-3546105No hitNo description
PRINTSPR004041.3E-264767IPR002100Transcription factor, MADS-box
PROSITE patternPS00350047101IPR002100Transcription factor, MADS-box
PfamPF003191.3E-235499IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-266782IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-2682103IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MHRCKLEDWN SKQHARAGQR RDVTWRESNE EEEEEATFAT RSTSMARGKI QLRRIENPVH  60
RQVTFCKRRA GLLKKARELS VLCDAHIGII IFSAHGKLYD LATTGYLCRL LCRALLLASS  120
WMSTSVVLST GLWKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-1645104160MEF2C
5f28_B2e-1645104160MEF2C
5f28_C2e-1645104160MEF2C
5f28_D2e-1645104160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443744.16e-38MADS-box transcription factor 26
SwissprotA2YQK92e-36MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-36MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLC5YLY71e-36C5YLY7_SORBI; Uncharacterized protein
STRINGSb07g001250.12e-37(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]