PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05127.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CAMTA

Protein Properties

Length: 285aa MW: 33147.9 Da PI: 9.7952

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05127.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	183.8	1.9e-57	21	137	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvev 80 ++ ++rwl++ ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+v Zmw_sc05127.1.g00050.1.sm.mkhc 21 VEAQNRWLRPAEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDV 99 6779************************************************************************* PP CG-1 81 lycyYahseenptfqrrcywlLeeelekivlvhylevk 118 l+cyYah+een++fqrr+ywlLee + +ivlvhylevk Zmw_sc05127.1.g00050.1.sm.mkhc 100 LHCYYAHGEENANFQRRTYWLLEEGFMNIVLVHYLEVK 137 *********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	79.025	16	142	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.0E-77	19	137	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.1E-51	22	136	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS50096	6.504	133	153	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAEMRNYSVS NQPPDIPQIL VEAQNRWLRP AEICQILSNY KKFSIAPEPP NRPPSGSLFL 60 FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ANFQRRTYWL 120 LEEGFMNIVL VHYLEVKAHV RGHQVRKSFR KIVWSVGIVE KVILRWRRKR RGLRGFQAEK 180 QLEGPSQSQI QPAGVEDEYD FLKDGRKQAE GRLQRALARV HSMTQYPEAR DQYRRLQTCV 240 TKLQESKEME DRMLSGTAGA DGGDFMAELE ELCHVDGDAT MSTIS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800735.1	6e-87	calmodulin-binding transcription activator 3-like
Swissprot	Q6NPP4	3e-68	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1E5VCX2	3e-87	A0A1E5VCX2_9POAL; Calmodulin-binding transcription activator 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP608	38	140

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]