PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05062.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 371aa    MW: 40027 Da    PI: 10.1627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05062.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19196246255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIrdps+ g  +r++lg+++ta eAa+a+++a+ +l+g
  Zmw_sc05062.1.g00020.1.am.mk 196 RYRGVRQRP-WGKYAAEIRDPSQKG--ARVWLGTYDTAVEAARAYDRAAFRLRG 246
                                   7********.**********97644..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.605196254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-32196255IPR001471AP2/ERF domain
SMARTSM003802.5E-38196260IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23196255IPR016177DNA-binding domain
CDDcd000183.88E-29196255No hitNo description
PfamPF008471.7E-13196246IPR001471AP2/ERF domain
PRINTSPR003671.3E-13197208IPR001471AP2/ERF domain
PRINTSPR003671.3E-13236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMKIYGQKAR THRAVSVYGI RPTTPGRLAS DVSAATSPWV PGFVRRTRKP PRSTVMSPYL  60
LAPASYIAVG GRVPRPLFNA DARNAAPAGP CSSPPPTPQR QVSSSHLKHL DLIRAHLLED  120
GHDVAAGAVS SDSDGSTASP SPSPPGRRQV PALSVTPPPR PATVVVHQQW AAAPSSQVRH  180
QQEQEHGCYE EDDFRRYRGV RQRPWGKYAA EIRDPSQKGA RVWLGTYDTA VEAARAYDRA  240
AFRLRGSKAI LNFPNEVAFG AAARWAAPSA ASLNNSYAAA AGNKRTRSPE QSLQWEAAES  300
LREVKKERVQ EPAASCDYWA AGVAVAPAPA SGGADFFWEE VEELKGTLCS LPLLSPLSPH  360
PHVAFPRLSV S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-27195260469ATERF1
3gcc_A5e-27195260469ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796155.12e-86ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3L6SDV42e-94A0A3L6SDV4_PANMI; Uncharacterized protein
STRINGPavir.Ib02259.1.p7e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465