PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05057.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 303aa    MW: 32371.7 Da    PI: 11.2497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05057.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-1385131354
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   ++h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  A  YI++L
  Zmw_sc05057.1.g00050.1.am.mk  85 VSHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAASYINEL 131
                                   589************************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.29482131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1085131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1685152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-1285136No hitNo description
Gene3DG3DSA:4.10.280.101.7E-1686145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1188137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDELLQPYSF SPPSPASTFF SQSQAGHPLI EFDSCERSCG RWGARFPRRL SYPSSRRSSG  60
TSAAAAPTGK RRGRKPGPRP DGPSVSHVEA ERQRRDKLNR RFCDLRAAVP TVSRMDKASL  120
LADAASYINE LRARVARLEA ETKRVSAARW EPVAAASCGG TAGGAGIVDQ AVEVRMLGPD  180
AAAVRTTSAA PHAPARRTCT SRTLASAAWA ASPIRLTIRP NNVQRSATPD VCAAATNTLH  240
VAKHSHRAYR LSALALAPTS QATSLVLAPT ALLESIVRFS YRLELIGSSE GQRFGGIVAV  300
VME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-1985145767Transcription factor MYC2
5gnj_B8e-1985145767Transcription factor MYC2
5gnj_E8e-1985145767Transcription factor MYC2
5gnj_F8e-1985145767Transcription factor MYC2
5gnj_G8e-1985145767Transcription factor MYC2
5gnj_I8e-1985145767Transcription factor MYC2
5gnj_M8e-1985145767Transcription factor MYC2
5gnj_N8e-1985145767Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404956.12e-61transcription factor MYC2
TrEMBLA0A060CZ292e-57A0A060CZ29_MAIZE; BHLH transcription factor (Fragment)
STRINGTraes_5DL_5DA6E1A09.11e-58(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130