PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04973.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 78aa    MW: 9131.53 Da    PI: 6.6298
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04973.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.9e-112176457
                                  E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETT CS
                            B3  4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksg 57
                                   l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W ++++y+ + +
  Zmw_sc04973.1.g00090.1.sm.mk 21 MLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDINGKEWLFQFRYWPNNN 76
                                  6789*********************555566778*****************77654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-171676IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-131777IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-82176IPR003340B3 DNA binding domain
CDDcd100173.41E-152277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MEEKMNLSLQ GEWEYQMLLQ MLSASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDI  60
NGKEWLFQFR YWPNNNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A3e-33578169B3 domain-containing transcription repressor VAL1
6fas_B3e-33578169B3 domain-containing transcription repressor VAL1
6j9a_A3e-3320782684B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888018.14e-34B3 domain-containing protein Os07g0563300-like
RefseqXP_016445999.11e-32PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
SwissprotQ5CCK43e-31VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A0A8Y1C92e-32A0A0A8Y1C9_ARUDO; Uncharacterized protein
TrEMBLA0A2P2MA132e-33A0A2P2MA13_RHIMU; B3 domain-containing protein Os07g0563300-like
TrEMBLA0A453BAW71e-32A0A453BAW7_AEGTS; Uncharacterized protein
TrEMBLW9SRZ63e-32W9SRZ6_9ROSA; B3 domain-containing protein
STRINGXP_010109656.15e-33(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]