PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04937.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 534aa MW: 57561.3 Da PI: 9.881 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 93.9 | 1.1e-29 | 230 | 324 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g Zmw_sc04937.1.g00050.1.am.mk 230 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 310 89***************************955556888******************************************* PP -EEEEEE-.SS.SE CS B3 78 DfvvFkld.gr.se 89 D+v F + g+ + Zmw_sc04937.1.g00050.1.am.mk 311 DTVSFGRGaGEaAR 324 *****955344444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-40 | 220 | 334 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-28 | 227 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.04E-25 | 228 | 315 | No hit | No description |
SMART | SM01019 | 1.1E-20 | 230 | 335 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-26 | 230 | 333 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.846 | 230 | 335 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MSGQEERNKA KPGIRITERS PEFACCCAET FPAPHRRRLL YAIGSAWPVA FQESSRAVPP 60 SASPRVGAQA AFPQLARSLY PSKQMNPPLA DPRIQQASEQ PSQSQPAARS LTASHRTDAA 120 AEAHDPPKER RGKGSRRRPK AAPRREDEEE GQEREEEGDD EASPREIPFM TAAASSSAPS 180 ASASAASASG SALRSSDGAG ASGRGGGGGG GDGGGNDDDD VEVIEKEHMF DKVVTPSDVG 240 KLNRLVIPKQ HAEKYFPLDA AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR 300 FVKEKRLDAG DTVSFGRGAG EAARDRLFID WKRRADVVRD PHWMPRIPLP VPSAASPYGP 360 WGGGAGGFFM PTSPPATLYE HHRLRQSLDF RDVNAAAPAR QLLFFGSAGM PPPGPMLPPP 420 PPPPPMHITV QPSPTVTAGL PMVLDSVSLV NSPTAASKRV RLFGVNLDNP HPGRGESSHD 480 ANALSRRMPG WQRPSPLRLF ELPHHQRNVA GEARVESSAA SSPSSSSSSK REAH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-60 | 225 | 334 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-60 | 225 | 334 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976592.1 | 1e-156 | B3 domain-containing protein Os02g0683500 | ||||
Swissprot | Q6EU30 | 1e-122 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | A0A1E5V6G8 | 1e-162 | A0A1E5V6G8_9POAL; B3 domain-containing protein | ||||
STRING | Si011823m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Publications ? help Back to Top | |||
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