PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04868.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 339aa MW: 37055.8 Da PI: 9.9857 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.3 | 4.1e-13 | 18 | 104 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtse 74 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ ++ Zmw_sc04868.1.g00100.1.sm.mk 18 CWSEGETAALVDAWGSRYLELKRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS---- 94 7*******************************************999999*********************999886.... PP trihelix 75 ssstcpyfdqle 86 s ++++ ql+ Zmw_sc04868.1.g00100.1.sm.mk 95 --SPWAFYGQLD 104 ..4688888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-23 | 16 | 104 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLELKR GSLRQPQWRE VADAVNSRPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGSSPWAFY GQLDLLVGPT LSASGAAAGK 120 RPSPPRAVPM LRRRQSPSPS RSPSPPMALP LPNYGRGSNL PSAVLHNAAA AAAAAAAESD 180 SYDGYNNNND YDDDAASQQS PSRSVSSRSG GAPPPPAVGS KRKASGSGGF GELARAIETF 240 AEMYERMESA KQRHAEEMER QRIKFLKDLE LKRMQAFVDM QLQLARAKHA RKGDASSEML 300 IYLVMVHTLK VESLAVNEFF VHLTLSSGLM LGQLCSEDY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458303.1 | 1e-139 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A3L6FIV1 | 1e-144 | A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2 | ||||
STRING | Sb03g030880.1 | 1e-138 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |