PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04858.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 426aa MW: 46086.5 Da PI: 6.1605 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 88 | 138 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +grW+AeIrdp + +r +lg+f taeeAa a++ a +l+g+ Zmw_sc04858.1.g00040.1.sm.mk 88 HFRGVRQRP-WGRWAAEIRDP-----HhrRRLWLGTFNTAEEAAVAYDSASIRLHGA 138 69*******.**********7.....447*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.16E-32 | 88 | 147 | No hit | No description |
PROSITE profile | PS51032 | 23.354 | 88 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 88 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-12 | 88 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-32 | 88 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 88 | 146 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MGPNPSLDTL AAVAVEAAAT ATALERRRAR VVRILVHDED ATDSSSDEDE EPQPPPRQLR 60 RARGGGGGRR SGVKRRVMEA LGPRPDVHFR GVRQRPWGRW AAEIRDPHHR RRLWLGTFNT 120 AEEAAVAYDS ASIRLHGAGA TTNFPTARYL PPLEPAEPIV SLSPAPGTVI TLPPVPVNPT 180 VPLQLEKDVG SCEDQGEVGA TTLVEVPVHQ QIVSLTPAPG TLITLPPVLV NPTVPQQVMD 240 EVGSCEDQEE LGATSLVEVP GRQQIVSLTH ASRLPQTLPH TLPPVPVNPT VPQQVMKEVG 300 SCEDQEEVGT TSLVEVPVHQ QIVSLPGLLI TLLPVPGNPT VPLLVMKEVG SCEDQEEVGA 360 TSLVEMPVHQ QMPLRETIAG HALREQQARW AHASHRYHTW AMPTSCAALC PVGRTTFHKH 420 VIVLHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-20 | 88 | 145 | 5 | 63 | ATERF1 |
3gcc_A | 7e-20 | 88 | 145 | 5 | 63 | ATERF1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |