PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04858.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 426aa    MW: 46086.5 Da    PI: 6.1605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04858.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1888138256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                                   +++GVr+++ +grW+AeIrdp     +  +r +lg+f taeeAa a++ a  +l+g+
  Zmw_sc04858.1.g00040.1.sm.mk  88 HFRGVRQRP-WGRWAAEIRDP-----HhrRRLWLGTFNTAEEAAVAYDSASIRLHGA 138
                                   69*******.**********7.....447*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.16E-3288147No hitNo description
PROSITE profilePS5103223.35488145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2988146IPR001471AP2/ERF domain
PfamPF008473.2E-1288137IPR001471AP2/ERF domain
SMARTSM003801.4E-3288151IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2188146IPR016177DNA-binding domain
PRINTSPR003674.5E-1089100IPR001471AP2/ERF domain
PRINTSPR003674.5E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGPNPSLDTL AAVAVEAAAT ATALERRRAR VVRILVHDED ATDSSSDEDE EPQPPPRQLR  60
RARGGGGGRR SGVKRRVMEA LGPRPDVHFR GVRQRPWGRW AAEIRDPHHR RRLWLGTFNT  120
AEEAAVAYDS ASIRLHGAGA TTNFPTARYL PPLEPAEPIV SLSPAPGTVI TLPPVPVNPT  180
VPLQLEKDVG SCEDQGEVGA TTLVEVPVHQ QIVSLTPAPG TLITLPPVLV NPTVPQQVMD  240
EVGSCEDQEE LGATSLVEVP GRQQIVSLTH ASRLPQTLPH TLPPVPVNPT VPQQVMKEVG  300
SCEDQEEVGT TSLVEVPVHQ QIVSLPGLLI TLLPVPGNPT VPLLVMKEVG SCEDQEEVGA  360
TSLVEMPVHQ QMPLRETIAG HALREQQARW AHASHRYHTW AMPTSCAALC PVGRTTFHKH  420
VIVLHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2088145563ATERF1
3gcc_A7e-2088145563ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835