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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04844.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 39895.5 Da PI: 6.5919 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 48 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l + ++++G g+W+++++ g+ R++k+c++rw +yl Zmw_sc04844.1.g00010.1.am.mk 48 RGLWSPEEDDKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 95 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 101 | 145 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE++l+++++ lG++ W+ Ia+ ++ gRt++++k++w++y Zmw_sc04844.1.g00010.1.am.mk 101 RGAFSQEEEDLIIHLHSVLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 145 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.668 | 43 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 43 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.35E-29 | 46 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 47 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 48 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-11 | 51 | 95 | No hit | No description |
PROSITE profile | PS51294 | 26.796 | 96 | 150 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 99 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 100 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 101 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-11 | 103 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
ARLSPSVRCP RLLATAVELE SSLGLLAAVA PAARMARRVA GPKKKLRRGL WSPEEDDKLM 60 NHIAKYGHGC WSSVPKLAGL ERCGKSCRLR WINYLRPDLK RGAFSQEEED LIIHLHSVLG 120 NKWSQIAAQL PGRTDNEVKN FWNSYIKKKL RQRGIDPATH KPLAVEAASS GRAASAASSR 180 SAVFVDAEFI LSSTTAGQHM PPLAVTAESY NDMYSHSSAE GGGSASAALV GGACSDGSLS 240 LSGYNQTADL ATGYLDPAVV LPSVSSSSTL NSIAGLSPAA TDEQCNNSNS AFESTPSCSA 300 AATDHLPWLE LGSSSYCTTA AAVDHYGAAL DELKWSEYVF DGYGAAQYQQ PGQGVYGDSK 360 DAVQFDADGL SSWCLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-30 | 46 | 150 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802131.1 | 1e-158 | transcription factor MYB61-like | ||||
TrEMBL | A0A0A9P2E3 | 1e-164 | A0A0A9P2E3_ARUDO; Uncharacterized protein | ||||
STRING | Si029872m | 1e-147 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |