PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04810.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 366aa MW: 40264.2 Da PI: 8.0818

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04810.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	69	6.9e-22	110	171	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 +Dgy WrKYGqK +++++fprsY+rC+++ gCp+ k+v+r ++d p +++Y eH+++ Zmw_sc04810.1.g00050.1.sm.mkhc 110 SDGYLWRKYGQKRITNKDFPRSYFRCSHHrkrGCPAMKQVQRHSHDePPQYIVVYVHEHTCD 171 6*************************99999*****87652678999****996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-23	100	172	IPR003657	WRKY domain
PROSITE profile	PS50811	18.854	104	173	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-21	104	171	IPR003657	WRKY domain
SMART	SM00774	1.9E-28	109	172	IPR003657	WRKY domain
Pfam	PF03106	3.5E-23	111	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MQAHSRFAAS SSVSADEHEA LIRELTRGHE LTARLWAEAP RALRGQGQAE DAAAFILQEV 60 SRAFTVCISI MRSPPPSRAP PTPPPTEAAT RRFRDENAPR REVVTYAPDS DGYLWRKYGQ 120 KRITNKDFPR SYFRCSHHRK RGCPAMKQVQ RHSHDEPPQY IVVYVHEHTC DTTVWEPEVT 180 PSPAPAGATT SPLPLPADYL PGQASQQRGV AQAEQERQAM VSTLAVVLGA HSPAGSGSRV 240 AAFEREPQQQ QHGASASVVD VGGGDELPRL DVDAELDVMD YDVTGAMYLG DSYGLPDDDG 300 LDLLSIRVRA VARAAACWCW KATVTSGTPA SRPRRRVDVT RVRVRRRCPY PARSFLLQGS 360 MAMSAD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MQAHSRFAAS SSVSADEHEA LIRELTRGHE LTARLWAEAP RALRGQGQAE DAAAFILQEV  60
SRAFTVCISI MRSPPPSRAP PTPPPTEAAT RRFRDENAPR REVVTYAPDS DGYLWRKYGQ  120
KRITNKDFPR SYFRCSHHRK RGCPAMKQVQ RHSHDEPPQY IVVYVHEHTC DTTVWEPEVT  180
PSPAPAGATT SPLPLPADYL PGQASQQRGV AQAEQERQAM VSTLAVVLGA HSPAGSGSRV  240
AAFEREPQQQ QHGASASVVD VGGGDELPRL DVDAELDVMD YDVTGAMYLG DSYGLPDDDG  300
LDLLSIRVRA VARAAACWCW KATVTSGTPA SRPRRRVDVT RVRVRRRCPY PARSFLLQGS  360
MAMSAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-14	111	170	10	68	OsWRKY45
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970387.1	5e-82	probable WRKY transcription factor 4
TrEMBL	K3XJP8	1e-80	K3XJP8_SETIT; Uncharacterized protein
STRING	Si002121m	2e-81	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12538	28	37