PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04810.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 263aa    MW: 30008 Da    PI: 6.5062
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04810.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.12e-1969128358
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnh 58 
                                   Dg+ WrKYGqK++k++e+pr YYrC+++   +C +   +++ s+edp + ++tY+ +H++
  Zmw_sc04810.1.g00020.1.sm.mk  69 DGHLWRKYGQKKIKDAEHPRLYYRCSYRddrRCLASMLLQQqSSEDPPLYHVTYTYQHTC 128
                                   9**************************99889****999752678*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2053131IPR003657WRKY domain
SuperFamilySSF1182905.36E-1962131IPR003657WRKY domain
SMARTSM007743.3E-2767130IPR003657WRKY domain
PfamPF031062.3E-2069128IPR003657WRKY domain
PROSITE profilePS5081115.9569131IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MESSRMKSEQ TVGFGDSNMQ DAMGSALDSY SPPGSGFELF PPEASPPDGR RRRRDIPSRS  60
EYTYTPYLDG HLWRKYGQKK IKDAEHPRLY YRCSYRDDRR CLASMLLQQQ SSEDPPLYHV  120
TYTYQHTCGA PPVPMPDIMV EQQRPTATAR KQGFVLRFDS PGGHGHHNDM QHHQAMSSRS  180
PYTMLSFGSS NQQPVFRSDP GAGSSSSSSF PTEALPAPST TSMNGDCDMY PAWNSLAYDL  240
EDRMRFSDHE HFHYNSTDFY YDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-13691281068OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456547.11e-91probable WRKY transcription factor 30
TrEMBLC5XNA03e-90C5XNA0_SORBI; Uncharacterized protein
STRINGSb03g038180.15e-91(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433