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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04756.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 24940.4 Da PI: 8.8737 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F++ L H+++H Zmw_sc04756.1.g00020.1.am.mk 104 YTCGYCKREFRSAQALGGHMNVH 126 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.85E-6 | 103 | 131 | No hit | No description |
Pfam | PF13912 | 1.6E-6 | 104 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MLVNVSSPLC DLLGSGSFGR LKGVLSRRKA PARLGKTCHV VFPGTASDKV DYSHNTLPAM 60 ERDHGRGLKH QHQQQQVAWT PGHNFGLSGC FSWPAVPQPL SSSYTCGYCK REFRSAQALG 120 GHMNVHRRDR ARLRQCCPAY APSPNLIAAH HRRAAAAGPP LPNLNFVPPQ CAGATTAEPV 180 VYSFFSTTTT SAMKAAVQVN LELGISGGFC GHDGAVPEEG GLDLELRLGC PLE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975075.2 | 5e-54 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A1E5W4I1 | 6e-61 | A0A1E5W4I1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J31403.1.p | 2e-54 | (Panicum virgatum) | ||||
STRING | Si011797m | 2e-54 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |