PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04727.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 1465aa MW: 159945 Da PI: 10.5612

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04727.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	680	699	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Zmw_sc04727.1.g00010.1.am.mk 680 FICHVCSKTFNRYNNMQMHM 699 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.9E-4	680	699	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.138	680	707	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	682	702	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1465 aa Download sequence Send to blast
AKGVTETPHC KAHASSASGT AGKRETVART AMAAARGACR GAAAVNLTQW AEKAEMEFVR 60 LCTQVSGPGW AEQEPMNHRP VSLGNTLTED NASSQAKMAK HICCLPGQDE TDRQTSWLTK 120 RSKSVGRQIG SQGAVEKTSI ARAMAARPRR LSPLARSALT QDETRGTTTA RRKRNLRTAR 180 ARRGVVDCSL AIESLAPAAH ATASRGLTGG ECASTVRRAD KPYLFNVGHT RLPGHRPQAP 240 AQLYLYDSLT AQPKHRFVSA WPRLQFCRVM FPLPVHFRRA PGSRGAVAKS FHWSVDMSDV 300 DPTLKLWLQS AAPVVYDPSF EIANQQKRSP VVLRADRWRR RGLSLDMGCT FRRPLIAGSL 360 AAPIFSGRRR PSSHHAPLLH TVSRPPLPER GIASRIPVPI HTQCRLASGE PYRAPMGRGA 420 TAIRRATSTT QRPSPSISLP LPAVFFFLLA VTCTRLDIDD PRISERASLP LFSPYAHHRT 480 PPPTKRFRLS GESNNLWFTQ WRAWRWLKPS SSLSPSSFSL STTSSSLSVA DGGLDTSLRL 540 PLLGRLEEGP PDHGRDNYPV TEELNNITTT GSTREEADVE LNIGLPAIGG YSSSDEAPMD 600 EEEDEEDDSM DSEEEKPSRQ HDNKCEKEAG DEQVRIEIMD GSDCLRVGGK ENMIKGVVSG 660 PGRRFWIPTP VQILIGPVQF ICHVCSKTFN RYNNMQMHMW GHGREYRKGP ESLKKGAQAA 720 ALALLKLPCF CCAPGCRNNV AHPRARSLKD FRTLQTHYKR KHGAKRFGCR RCGKPFAVKG 780 DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGGHLP VAPQEQAPPA AVPPQARQRI 840 IRFDQAAPGN IGLGHDDARS LDSQPDHTTL ISSDLDDVCV DVLSETCRDR TALAPMLVCL 900 RFVTSAAKGG DRILCSSGPR VGGRPAPAFV GRLALPATTS VYFPFLASPA NSGDAYRGNG 960 TTHGSALEKR YVDEEQLDEQ IPLVFLSHHR EETHLGSYVV AHGEHIFHPC LSQSGRPQIQ 1020 RTPDAGRSAI SSARTHGCPP AVRITPACQD APRPARVPIK PDAISAAFLN RGKKLCRRSS 1080 PGTRSAAPRS ATVRVGGAAN DHITDRLLGL SADAARARAF AGHPRSTFSP QSVVGPRALT 1140 EPKKWSSVDV LMIGTCWIFN PIGGLSRHQI THGCTLGVRL IYSLIRPLAS RPVHDDSAAS 1200 NKLTLEIILS ERRIGMRAAS ATDRESFDLT QSDTLPPEQL MSQLKSLLRR LDQLPSHHDR 1260 SPRLRTARPR RPLRRTAGAT SAVGHAPRPS ERKRAVENSK CMRLVAWLFR PQPDGATTVP 1320 RSTAAFVPAP SATAAQRRSV PSPLTEQSGA RGVTFCEPRP AETPPRRDGV TNKSPSSSVV 1380 DVVGSGPGSV LERLRPTGAG GVMSACARTG AVASRRLVAG GIAESSSRRE CERRTGRPEM 1440 ETPACFLVER PQWSFSCQMP MYVAI

Sequence ? help Back to Top

Protein Sequence Length: 1465 aa Download sequence Send to blast

AKGVTETPHC KAHASSASGT AGKRETVART AMAAARGACR GAAAVNLTQW AEKAEMEFVR  60
LCTQVSGPGW AEQEPMNHRP VSLGNTLTED NASSQAKMAK HICCLPGQDE TDRQTSWLTK  120
RSKSVGRQIG SQGAVEKTSI ARAMAARPRR LSPLARSALT QDETRGTTTA RRKRNLRTAR  180
ARRGVVDCSL AIESLAPAAH ATASRGLTGG ECASTVRRAD KPYLFNVGHT RLPGHRPQAP  240
AQLYLYDSLT AQPKHRFVSA WPRLQFCRVM FPLPVHFRRA PGSRGAVAKS FHWSVDMSDV  300
DPTLKLWLQS AAPVVYDPSF EIANQQKRSP VVLRADRWRR RGLSLDMGCT FRRPLIAGSL  360
AAPIFSGRRR PSSHHAPLLH TVSRPPLPER GIASRIPVPI HTQCRLASGE PYRAPMGRGA  420
TAIRRATSTT QRPSPSISLP LPAVFFFLLA VTCTRLDIDD PRISERASLP LFSPYAHHRT  480
PPPTKRFRLS GESNNLWFTQ WRAWRWLKPS SSLSPSSFSL STTSSSLSVA DGGLDTSLRL  540
PLLGRLEEGP PDHGRDNYPV TEELNNITTT GSTREEADVE LNIGLPAIGG YSSSDEAPMD  600
EEEDEEDDSM DSEEEKPSRQ HDNKCEKEAG DEQVRIEIMD GSDCLRVGGK ENMIKGVVSG  660
PGRRFWIPTP VQILIGPVQF ICHVCSKTFN RYNNMQMHMW GHGREYRKGP ESLKKGAQAA  720
ALALLKLPCF CCAPGCRNNV AHPRARSLKD FRTLQTHYKR KHGAKRFGCR RCGKPFAVKG  780
DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGGHLP VAPQEQAPPA AVPPQARQRI  840
IRFDQAAPGN IGLGHDDARS LDSQPDHTTL ISSDLDDVCV DVLSETCRDR TALAPMLVCL  900
RFVTSAAKGG DRILCSSGPR VGGRPAPAFV GRLALPATTS VYFPFLASPA NSGDAYRGNG  960
TTHGSALEKR YVDEEQLDEQ IPLVFLSHHR EETHLGSYVV AHGEHIFHPC LSQSGRPQIQ  1020
RTPDAGRSAI SSARTHGCPP AVRITPACQD APRPARVPIK PDAISAAFLN RGKKLCRRSS  1080
PGTRSAAPRS ATVRVGGAAN DHITDRLLGL SADAARARAF AGHPRSTFSP QSVVGPRALT  1140
EPKKWSSVDV LMIGTCWIFN PIGGLSRHQI THGCTLGVRL IYSLIRPLAS RPVHDDSAAS  1200
NKLTLEIILS ERRIGMRAAS ATDRESFDLT QSDTLPPEQL MSQLKSLLRR LDQLPSHHDR  1260
SPRLRTARPR RPLRRTAGAT SAVGHAPRPS ERKRAVENSK CMRLVAWLFR PQPDGATTVP  1320
RSTAAFVPAP SATAAQRRSV PSPLTEQSGA RGVTFCEPRP AETPPRRDGV TNKSPSSSVV  1380
DVVGSGPGSV LERLRPTGAG GVMSACARTG AVASRRLVAG GIAESSSRRE CERRTGRPEM  1440
ETPACFLVER PQWSFSCQMP MYVAI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP63939	2	2