PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04707.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 367aa MW: 39317.9 Da PI: 5.6751

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04707.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.7	3.1e-30	175	233	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++++ tY+geHnh Zmw_sc04707.1.g00070.1.sm.mkhc 175 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTDPNTFILTYTGEHNHA 233 79***********************998**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.0E-30	165	235	IPR003657	WRKY domain
PROSITE profile	PS50811	32.833	169	235	IPR003657	WRKY domain
SuperFamily	SSF118290	1.23E-25	173	235	IPR003657	WRKY domain
SMART	SM00774	7.8E-36	174	234	IPR003657	WRKY domain
Pfam	PF03106	3.4E-25	176	232	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MEEEHCCNSW DLDAVVRLAC RRRRLSPPPV QVNDPFDSFP PTPSLPPQGP PGAPNPANEK 60 EADAGWRFPD LRSGDGQDGD ELLRALMAAR PPVPPSLPPP PLPTLPPPPQ QQQQQPVVVT 120 PTAEVPVQAR AGPASARARA QPSGRQVPGA VQRSKRRKNQ VKKMVCHVPA DGSSSDVWAW 180 RKYGQKPIKG SPYPRGYYRC SSSKGCAARK QVERCRTDPN TFILTYTGEH NHAAPTHRNS 240 LAGTTRHKCP SVASPPPPSV VVGSSESQQQ QQPSPSAPST SAGLSPTTPL RTPSMEEEDD 300 EEEDELLVED MEMAGEDELL FLHGDVDSAV PLQPMSSVFD VVDEPFLGSP WASTTAGSPA 360 AGAAAGS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MEEEHCCNSW DLDAVVRLAC RRRRLSPPPV QVNDPFDSFP PTPSLPPQGP PGAPNPANEK  60
EADAGWRFPD LRSGDGQDGD ELLRALMAAR PPVPPSLPPP PLPTLPPPPQ QQQQQPVVVT  120
PTAEVPVQAR AGPASARARA QPSGRQVPGA VQRSKRRKNQ VKKMVCHVPA DGSSSDVWAW  180
RKYGQKPIKG SPYPRGYYRC SSSKGCAARK QVERCRTDPN TFILTYTGEH NHAAPTHRNS  240
LAGTTRHKCP SVASPPPPSV VVGSSESQQQ QQPSPSAPST SAGLSPTTPL RTPSMEEEDD  300
EEEDELLVED MEMAGEDELL FLHGDVDSAV PLQPMSSVFD VVDEPFLGSP WASTTAGSPA  360
AGAAAGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-19	158	236	2	80	Disease resistance protein RRS1
5w3x_D	4e-19	158	236	2	80	Disease resistance protein RRS1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001130964.1	1e-131	uncharacterized protein LOC100192069
TrEMBL	A0A1D6QP27	1e-130	A0A1D6QP27_MAIZE; WRKY transcription factor 22
STRING	GRMZM2G038158_P01	1e-131	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5358	33	61