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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04697.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 700aa MW: 72852.3 Da PI: 6.2698 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 246.8 | 8.9e-76 | 342 | 697 | 3 | 371 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 + L ++A+a ++g+ + a+++Larl+++ p g+p+ R a+y++eAL a + + ++ t++ +++ +laa+k Zmw_sc04697.1.g00040.1.sm.mk 342 DELAAAAKATEAGNSTGAREILARLNHQLPPFGKPFLRSASYLKEALLALAEGR----HHHGGSRLTTPLDVALKLAAYKS 418 7899********************************************999993....33345566666779********* PP GRAS 84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeel 158 fs++sP+l+f+++ta qa+l++++++ +++H+iDfd++ G+QW+++lq+La R+ + p +++ +++s++s++ el Zmw_sc04697.1.g00040.1.sm.mk 419 FSDLSPVLQFTNFTATQALLDEIASSsaSCIHVIDFDLGVGGQWASFLQELAHRRcaggATMPFVKLSAFVSAASHHPLEL 499 **********************99987899***********************9998666689****************** PP GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 + ++++++fA lg+pfefn++ +++++++ eL + +E++aV+l + + +++L+lvk+l Pkv Zmw_sc04697.1.g00040.1.sm.mk 500 RLAKDNISQFAGDLGIPFEFNAI---SVDAFNPAELISPTgDEVIAVSLPVGCSARA---PP----LPAILRLVKQLGPKV 570 **********************9...8999***9*9666689********9777665...44....556************ PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 vv +++ d+ + +F ++ l++++ ++ l+dsl+a+ + +++ ++k+E++l++++i++ v + ++ + + Wr+++ Zmw_sc04697.1.g00040.1.sm.mk 571 VVAIDHGGDRADLPFSQHYLNCFQSCVFLLDSLDAS-GIDADSASKIEKFLIQPRIEDTVIGRCKS-----DKPMAWRSAF 645 *********************************999.8999*******************988887.....78999***** PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +aGF pv+ s a++qa++ll++v+++g++ve+ l+l+W++ ++ +S Zmw_sc04697.1.g00040.1.sm.mk 646 AAAGFAPVSPSILAEAQANCLLKRVQVRGFHVEKCGVGLTLYWQRDQVELLS 697 ********************************************99887666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.62 | 314 | 680 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-73 | 342 | 697 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MRAALFGAER NGAADLVGGG KALVEPRSVL DCTRSPSPNN STSTLSSSLG GGAADSAGGV 60 AAVSDNSAAA AKRGAPGEHG GGGGGGKEDW AGGCDLPPIP SGLDMGLVGG DGWDAVLGSA 120 AAAGQDQTFL NWIIGAAGDL DQPGPTLQVH NQPLLDNAGF GFPATDPLGF SLEPHLGGVA 180 SDLSSPGAVS HTSNSGGGSK ASSSFGLFSP ESASLQPTPP PMLFHEGIDT KPPLLAAQPP 240 GLLHQYQHHP PPPASTFFMP LPSFTDHNQQ PPLLQPPPKR HPSMADDLYH ARNRLPSAAA 300 AQGLPFPPIH GPAPFQFHPS PTVPHGAMKS TVAEAAQQQL LDELAAAAKA TEAGNSTGAR 360 EILARLNHQL PPFGKPFLRS ASYLKEALLA LAEGRHHHGG SRLTTPLDVA LKLAAYKSFS 420 DLSPVLQFTN FTATQALLDE IASSSASCIH VIDFDLGVGG QWASFLQELA HRRCAGGATM 480 PFVKLSAFVS AASHHPLELR LAKDNISQFA GDLGIPFEFN AISVDAFNPA ELISPTGDEV 540 IAVSLPVGCS ARAPPLPAIL RLVKQLGPKV VVAIDHGGDR ADLPFSQHYL NCFQSCVFLL 600 DSLDASGIDA DSASKIEKFL IQPRIEDTVI GRCKSDKPMA WRSAFAAAGF APVSPSILAE 660 AQANCLLKRV QVRGFHVEKC GVGLTLYWQR DQVELLSMYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-18 | 348 | 689 | 27 | 368 | Protein SCARECROW |
5b3h_A | 5e-18 | 348 | 689 | 26 | 367 | Protein SCARECROW |
5b3h_D | 5e-18 | 348 | 689 | 26 | 367 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682654.1 | 0.0 | scarecrow-like protein 27 | ||||
TrEMBL | A0A368PPT9 | 0.0 | A0A368PPT9_SETIT; Uncharacterized protein | ||||
STRING | Si016508m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |