PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc04649.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 155aa MW: 17055.3 Da PI: 8.41 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 69.8 | 5.2e-22 | 3 | 77 | 300 | 374 |
GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ega+rrerh +l+kW +rle aGF++vpls+ a+ + +l +++++g + e +g+l+l+W + pL+svSaWr Zmw_sc04649.1.g00010.1.am.mk 3 REGARRRERHDRLQKWAARLEVAGFRNVPLSYVAMRRGNEMLGRCGVRGCESAELRGCLLLCWCTCPLYSVSAWR 77 699***********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.48 | 1 | 57 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-19 | 3 | 77 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
LLREGARRRE RHDRLQKWAA RLEVAGFRNV PLSYVAMRRG NEMLGRCGVR GCESAELRGC 60 LLLCWCTCPL YSVSAWRPDP GEAAGDTEYL SPPSQVDVDM LNAFLGVGGG VTIGSTLKPH 120 RRLNDVQPPG QCRQCRTPGR HDADGEHGGT AEAQR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980153.2 | 4e-34 | scarecrow-like protein 3 | ||||
TrEMBL | A0A3L6PHS5 | 9e-34 | A0A3L6PHS5_PANMI; Scarecrow-like protein 3 | ||||
STRING | Pavir.J31854.1.p | 1e-35 | (Panicum virgatum) | ||||
STRING | Si028262m | 3e-33 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |