PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04646.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 272aa    MW: 29033.5 Da    PI: 6.9855
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04646.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.91.1e-4071061100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +Ca+Ck+lrrkC+++Cv+apyfp ++p+kf +vh++FGasnv+k+l++lp+++r da++sl+yeAear++dPvyG+v+ i+
  Zmw_sc04646.1.g00010.1.sm.mk   7 PCAVCKLLRRKCTQGCVFAPYFPPDNPAKFSCVHRVFGASNVTKILNDLPQHQRGDAVASLAYEAEARIHDPVYGCVSYIT 87 
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                   +lq + +q ++e+a++++e
  Zmw_sc04646.1.g00010.1.sm.mk  88 ALQVRFNQIREEIAAARKE 106
                                   **************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.5586107IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-407104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSSSSSPCAV CKLLRRKCTQ GCVFAPYFPP DNPAKFSCVH RVFGASNVTK ILNDLPQHQR  60
GDAVASLAYE AEARIHDPVY GCVSYITALQ VRFNQIREEI AAARKELARY IGPAAFVPLV  120
AAAPQYHHQQ YAGGVHLGVA HGHPHHQQQM VQLQHQHQQM AEAQQMAAAV EVAREQGVMM  180
RQAATYAHAL QGSDAGAAVA IVPHDAGAPY DGAFLSQQQQ PAPHAQTAVA LTYQMGSSPP  240
PSSPGQSPPE EVSHQQHTDG SDESSGGVAQ PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4641108114LOB family transfactor Ramosa2.1
5ly0_B1e-4641108114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704292.11e-101LOB domain-containing protein 6
TrEMBLA0A1E5VYJ41e-103A0A1E5VYJ4_9POAL; LOB domain-containing protein 36
STRINGSi036905m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456