PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04611.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 202aa MW: 22339.7 Da PI: 11.7926 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 30.4 | 1e-09 | 21 | 82 | 1 | 66 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt +e+laL++a++ + +++r+ l ++W++v+ + ++++ qC++k e+l++r + ++ Zmw_sc04611.1.g00040.1.sm.mk 21 CWTPDETLALVRAYTARRLAVGREHLTSADWAAVATAAP----SKTARQCRHKVEKLRRRLRSSRR 82 8*********************************99865....689*************9998765 PP | |||||||
2 | Myb_DNA-binding | 21.5 | 5.4e-07 | 21 | 73 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqky 47 WT++E + lv+a + +W+++a + +t+ qc+++ k+ Zmw_sc04611.1.g00040.1.sm.mk 21 CWTPDETLALVRAYTARRLAvgrehltsaDWAAVATAAP-SKTARQCRHKVEKL 73 6************99877668899***************.*********98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.69E-5 | 18 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 6.6E-8 | 20 | 82 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-5 | 22 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.504 | 22 | 74 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MASPSASPRA NGSGRRVPPP CWTPDETLAL VRAYTARRLA VGREHLTSAD WAAVATAAPS 60 KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP IMSRVQSPSP SRSPSPPPAV 120 SLPSPCSPPA SPPRKRRRDD YGVSDLVGAL RAIGEGFLRA EERRMEAARE TQRMRMDMAL 180 RHLDAQRRLM EVFVGRIVDA LD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | KLRRRLR |
2 | 72 | 78 | LRRRLRS |
3 | 133 | 137 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144478.1 | 1e-82 | uncharacterized protein LOC100277445 | ||||
TrEMBL | B6TUK0 | 2e-81 | B6TUK0_MAIZE; FRIGIDA interacting protein 2 | ||||
STRING | GRMZM2G320827_P01 | 4e-82 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 |