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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04591.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 26681.5 Da PI: 5.0257 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 2.9e-16 | 112 | 155 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 y+GVr+++ +g+++AeIrd + ng +r++lg+f taeeAa a+++ Zmw_sc04591.1.g00070.1.sm.mk 112 SYRGVRRRP-WGKFAAEIRDTRRNG--ARVWLGTFATAEEAALAYDR 155 69*******.**********54455..******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.52E-20 | 111 | 168 | No hit | No description |
Pfam | PF00847 | 2.1E-11 | 112 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-18 | 112 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-22 | 112 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-16 | 112 | 158 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.11 | 112 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-11 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAIGGQGSGS NQPNEGSNIL ENVWATIMTE CSAATPASSS TAVSSSEAGE PKPEKILQRL 60 PSLGRWISMG AEEWDELLSG TTPDASGEEL LVSSPPALKH EDRAAPVPTC KSYRGVRRRP 120 WGKFAAEIRD TRRNGARVWL GTFATAEEAA LAYDREVAAA GSGGSEATRV LRRRRRRTGA 180 ADAASSTRSA CSDQTMVSFA WGSGQEGGMM TERSSSDAGA IAFEDIGGEC WDYLFAPLWG 240 DDILIRHQHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 111 | 155 | 4 | 48 | ATERF1 |
3gcc_A | 3e-19 | 111 | 155 | 4 | 48 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 176 | RVLRRRRRR |
2 | 172 | 177 | RRRRRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806647.1 | 2e-83 | ethylene-responsive transcription factor 15-like | ||||
TrEMBL | A0A2S3H9P9 | 5e-82 | A0A2S3H9P9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00939.1.p | 5e-84 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |