PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04554.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 534aa MW: 57956.9 Da PI: 9.3602 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.8 | 9.6e-14 | 15 | 111 | 3 | 99 |
EE-..-HHHHT..T-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 3 kvltpsdvlks..grlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 kvl+p+++++s + l+++ a++ gg +++ t + + +++W v + + +++ +l++GW eFv a+g+ + Zmw_sc04554.1.g00040.1.am.mk 15 KVLLPPSSFSSscHKLRISDALARRLddGGAGAGG-TAFVVSpVGSKVWHVAV--GRDDDGAFLGRGWPEFVAAHGIGASW 92 78888888888788899999999999975555555.5555551666*******..************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 fvvF++dg ++ l+vk+f++ Zmw_sc04554.1.g00040.1.am.mk 93 FVVFRHDG--GGVLTVKAFDT 111 *****765..77789*99987 PP | |||||||
2 | B3 | 44.5 | 2.8e-14 | 146 | 230 | 9 | 97 |
HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++++ + +p kf+++h g ++s + l ++ g+ W+v++ + sg+++l++GW++F +ng++eg+ ++++++g Zmw_sc04554.1.g00040.1.am.mk 146 RGFTEK-MAIPLKFVRTHltaG---TNSDMPALLNLGGKYWRVEVE-KDVSGSVFLSTGWSRFLASNGINEGEALLLRYEG 221 445554.99*********8643...35567899************4.44456799************************** PP SSEE..EEEEE CS B3 87 rsefelvvkvf 97 ++ f +vkvf Zmw_sc04554.1.g00040.1.am.mk 222 NMVF--TVKVF 230 **99..88877 PP | |||||||
3 | B3 | 47.4 | 3.5e-15 | 297 | 388 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangL 74 ++k+++++++l+++ + l +f++++g ++++ +tlt ++ s sW+v+ +++ +s + ++GW +F+++n+L Zmw_sc04554.1.g00040.1.am.mk 297 WIKKEIKAYALSNH-VPLAGRFCKAIGFSEPCVITLTTTTYSTasggaaaGSWKVRGCVDSHSTCKLGGRGWTSFCRDNRL 376 78999********9.***********99999987777777666889***********999999889999************ PP -TT-EEEEEE-S CS B3 75 kegDfvvFkldg 86 +egD+++F ++g Zmw_sc04554.1.g00040.1.am.mk 377 REGDVCTFNVVG 388 ********9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 6.8E-8 | 14 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-11 | 15 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.474 | 15 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.40E-8 | 15 | 110 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-13 | 16 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-13 | 21 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-19 | 134 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-20 | 135 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.155 | 137 | 233 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.72E-15 | 138 | 230 | No hit | No description |
SMART | SM01019 | 3.7E-13 | 140 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-12 | 149 | 230 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-12 | 293 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-13 | 295 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-9 | 298 | 388 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.048 | 298 | 400 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.59E-6 | 347 | 384 | No hit | No description |
PROSITE profile | PS50863 | 9.319 | 347 | 400 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MGPTGDHRAI SSHLKVLLPP SSFSSSCHKL RISDALARRL DDGGAGAGGT AFVVSPVGSK 60 VWHVAVGRDD DGAFLGRGWP EFVAAHGIGA SWFVVFRHDG GGVLTVKAFD TSSCLHEFSR 120 RLIVAANGSD AAIGPRRPQF IKVLLRGFTE KMAIPLKFVR THLTAGTNSD MPALLNLGGK 180 YWRVEVEKDV SGSVFLSTGW SRFLASNGIN EGEALLLRYE GNMVFTVKVF GLDGCEKSFN 240 KPRDEGVTIS WVQDAPSSSP AGQREGRRDK RQAPSVAETK AKRPRSNCTY EIGPPSWIKK 300 EIKAYALSNH VPLAGRFCKA IGFSEPCVIT LTTTTYSTAS GGAAAGSWKV RGCVDSHSTC 360 KLGGRGWTSF CRDNRLREGD VCTFNVVGPT LWHVDIARRC STRHEPTAPN LSSSSSSVAM 420 HNSFTSSAQA IPPEFVKNHM ADAQTNGELA VLLRLAGTKF RRVELETDPS GNVLLLRLEG 480 SMAFTVKVLR PDGCQKSFES RKEHLRILDL EQINDCIFKP DELAGRHVSE RAVD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825226.1 | 1e-114 | putative B3 domain-containing protein Os04g0347400 | ||||
STRING | Pavir.Ga02236.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |