PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04550.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 96aa    MW: 11174.4 Da    PI: 11.6622
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04550.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-28959151
                                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    k+ien ++rqvtfskRr+g++KKA+EL vLCda+v v++fsstg+ly++s+
  Zmw_sc04550.1.g00040.1.sm.mkhc  9 KKIENMTRRQVTFSKRRTGLFKKAKELAVLCDAQVGVLVFSSTGRLYDFSN 59
                                    78***********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.917161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.16E-33360No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26368IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MVRGKTVMKK IENMTRRQVT FSKRRTGLFK KAKELAVLCD AQVGVLVFSS TGRLYDFSNT  60
RWYLNIKENV MHRKVLLPSI ALLVRQMMMT TTFNLS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641670.13e-30MADS-box transcription factor 23-like
SwissprotA2RVQ53e-26AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A0D3GGC57e-31A0A0D3GGC5_9ORYZ; Uncharacterized protein
STRINGOBART06G14060.11e-31(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]