PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04524.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 546aa    MW: 58399.2 Da    PI: 11.0249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04524.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19372422256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g+
  Zmw_sc04524.1.g00060.1.am.mk 372 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAIAYDKAAFRLRGA 422
                                   59******9.**********955...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-29371429No hitNo description
Gene3DG3DSA:3.30.730.102.2E-31372430IPR001471AP2/ERF domain
PROSITE profilePS5103223.037372429IPR001471AP2/ERF domain
SMARTSM003801.4E-35372435IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22372429IPR016177DNA-binding domain
PRINTSPR003676.7E-10373384IPR001471AP2/ERF domain
PfamPF008472.1E-12373421IPR001471AP2/ERF domain
PRINTSPR003676.7E-10395411IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MPHERISPPR HVLPLKIARA NKLRELSTRS QCAVDSMQTQ LRRGRGPPRR CARINGGILS  60
GVQRAGAAIR RGAIWPRAID RDVRRLIVTG TVARPGSEGV GLLGACVAPI TGSVEHGSAV  120
SAPATTPIHS RSLRATGDFP PYINPGAGGQ QSPRATPPPP PPPPPHYTPP HNTSLPCHHR  180
PAIINPSTSP VRPSDPSQLP TQPPPPDTTA ATGVLHPPPP SLPPHPSTPT PHAPPLLCLK  240
IRTTTFQRHP LITPRSRHRX XXXATSALPQ DSYHYFPASS SYYTALPPPP APTATSFSQL  300
PPLPPSSSYA SPATLVDGAA GLAHLSQAQI QQIQTQLLAQ QHQQQQRGLA ASFLGPRAQL  360
MKHPSSAAAG KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDSAEDAAI AYDKAAFRLR  420
GAAARLNFPS LRRGGAHLAG PLDASVDAKL AAICRSLDAS TKPRAAAHPD SPKASASTTT  480
SEGDESVHSA SSPPPLTAPS QQQQKPAPPL PEMASLDFTE APWDESATFH LDKFPSWEID  540
WDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20368429163ATERF1
3gcc_A2e-20368429163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.11e-108ethylene-responsive transcription factor RAP2-13
TrEMBLA0A3L6PCC81e-108A0A3L6PCC8_PANMI; Ethylene-responsive transcription factor RAP2-13-like
STRINGPavir.Da01302.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203