PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04517.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 141aa MW: 15621.3 Da PI: 12.4643

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04517.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.2e-05	101	119	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cg++F+ ++ L rH Zmw_sc04517.1.g00120.1.sm.mk 101 CRVCGRRFRERDALLRHFE 119 *****************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.988	99	127	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.76E-5	99	124	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.6E-4	99	125	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	101	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MLPPLSNLRR RLMATAPKFL APPLLRSLST TAAPPARKPT TAVAILWDLA ASRPPSTLPL 60 YDAAVRLHLA ATSFGRLHLS AAFLHPSHRL HGPAAVSTHL CRVCGRRFRE RDALLRHFEA 120 IHTREHAKRL ARIDSARGGR R

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021319279.1	7e-70	uncharacterized protein LOC110436487
TrEMBL	A0A3L6G324	4e-67	A0A3L6G324_MAIZE; Uncharacterized protein
STRING	Si010574m	2e-66	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12234	20	23