PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04490.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 366aa MW: 40034.9 Da PI: 7.5018 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.3 | 4.4e-29 | 154 | 207 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eC++NhAa+lG+h++DGC+Efmps +e ++al CaACgCHR+FHRre + Zmw_sc04490.1.g00090.1.am.mk 154 QWRYRECQRNHAARLGAHVLDGCCEFMPSANE--GPDALACAACGCHRSFHRREAV 207 789*************************9555..59*****************986 PP | |||||||
2 | Homeobox | 14.3 | 7e-05 | 266 | 322 | 1 | 53 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+ft+eq +++ e+ + + ++p+ ++ +++g++ r+ kvW +N + Zmw_sc04490.1.g00090.1.am.mk 266 KRFRTKFTAEQKDRMREFAHrvgwRIHKPDYDAVDAFCAEVGVSRRVLKVWMHNNKH 322 789***********987655888779****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.0E-25 | 155 | 206 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.8E-24 | 156 | 205 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-15 | 156 | 206 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.448 | 157 | 205 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-30 | 257 | 324 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.44E-19 | 259 | 323 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.8E-27 | 265 | 321 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEYKGSSHVE EEEDDMDEEE EEDDEEENRG RRYTTAPAAP VGAPQPQVVH GQAHGLLGSH 60 SSVTTESQSA AFSRPLLPPN SSLVSSQLPP PPGFLQPQRQ PQQAHPRKPE RGGGTQAQHQ 120 QVRLQQELAR NGTTPTPPSA STLALTTGAV VQPQWRYREC QRNHAARLGA HVLDGCCEFM 180 PSANEGPDAL ACAACGCHRS FHRREAVHGV GATASVSPSP XSPSSAPAAL TESSSEELRG 240 SAPARPLPPP QLAVGSASAP PAPSKKRFRT KFTAEQKDRM REFAHRVGWR IHKPDYDAVD 300 AFCAEVGVSR RVLKVWMHNN KHLAKMPPHS PSSGQQQPAP SHHHHHHHDH HHYPPPHQHH 360 QQQHNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 264 | 334 | 16 | 80 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452677.1 | 5e-97 | zinc-finger homeodomain protein 7 isoform X1 | ||||
Swissprot | Q8S3Q9 | 1e-59 | ZHD7_ORYSJ; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A0A8Y4W6 | 1e-101 | A0A0A8Y4W6_ARUDO; Uncharacterized protein | ||||
STRING | Sb04g030480.1 | 2e-96 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13491 | 23 | 29 |