PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04490.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 466aa MW: 50140.8 Da PI: 9.8044

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04490.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	225	284	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++ Zmw_sc04490.1.g00060.1.am.mk 225 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRA 284 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-32	223	283	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-33	226	283	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.227	229	283	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	231	267	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MHGSPPPIAV SFRFSSSSLS FHWSCMHGDQ NIPRGSTPPR LRRPDYALLR EGRVKAAGRQ 60 MGTHRDARRP AARDARNQSV GAHGTGEADE ERRGEWAVRS GPADTSPAST TLLLCSLSAS 120 TAPRELFRPF LFTPPPRPSF TSQIARQQPP PAAPPHHRLL PLLIRRSMMA GAPPMHIYMD 180 SDLFKGIIPE EPGLGSSSPS TELIVCPRQM HPAAAVADRR LRPQHDQPLK CPRCESTHTK 240 FCYYNNYSLS QPRYFCKTCR RYWTKGGSLR NVPVGGGCRK NKRANTKKQA AAAPPLLQGP 300 ARHVTETDLH LSFSSGMQQL PPTPASVDPL SSFGLLDWTW KYDPMLAGSA GGAAALDQSA 360 SSEAHFAGPG MTAGGGGECH ALSALRYAAG LGEHLQALPP LLRSSHAEND AVDVKPAATD 420 RLLSLEWYGE ASRAPESAIS SLGALGLWSG MFGGAHQQHP GSSAAI

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MHGSPPPIAV SFRFSSSSLS FHWSCMHGDQ NIPRGSTPPR LRRPDYALLR EGRVKAAGRQ  60
MGTHRDARRP AARDARNQSV GAHGTGEADE ERRGEWAVRS GPADTSPAST TLLLCSLSAS  120
TAPRELFRPF LFTPPPRPSF TSQIARQQPP PAAPPHHRLL PLLIRRSMMA GAPPMHIYMD  180
SDLFKGIIPE EPGLGSSSPS TELIVCPRQM HPAAAVADRR LRPQHDQPLK CPRCESTHTK  240
FCYYNNYSLS QPRYFCKTCR RYWTKGGSLR NVPVGGGCRK NKRANTKKQA AAAPPLLQGP  300
ARHVTETDLH LSFSSGMQQL PPTPASVDPL SSFGLLDWTW KYDPMLAGSA GGAAALDQSA  360
SSEAHFAGPG MTAGGGGECH ALSALRYAAG LGEHLQALPP LLRSSHAEND AVDVKPAATD  420
RLLSLEWYGE ASRAPESAIS SLGALGLWSG MFGGAHQQHP GSSAAI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001136632.1	1e-142	Dof zinc finger protein DOF2.1
TrEMBL	A0A0A9D8K8	1e-145	A0A0A9D8K8_ARUDO; Uncharacterized protein
TrEMBL	B6UAM8	1e-145	B6UAM8_MAIZE; Uncharacterized protein
STRING	GRMZM2G140694_P01	1e-142	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63