PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc04477.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 318aa MW: 34090.6 Da PI: 4.6378

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04477.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	27	58	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT eEd ll ++++ +G g+W++ ar+ g Zmw_sc04477.1.g00070.1.am.mk 27 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSG 58 89***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-9	20	56	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.062	22	55	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.87E-7	24	56	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-6	27	55	IPR001005	SANT/Myb domain
CDD	cd00167	1.15E-4	29	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MSQIRKGAMA VASSKQRQQE EEMELRRGPW TLEEDNLLMN YIACHGEGRW NLLARCSGEF 60 FLQVEEDGQE LPAQKQARQL RVDANSPVFR DAVRCYWMPR LLEKMAATTA HHNSHVEPAA 120 VPLPLHPAAS IGDVMHMGSS SPIHHGSQSQ LHDATNVPAE SGGGYQQRYY YHEVVDPSPS 180 TSTTSGSGST TAAALPPVPC FSEQSWVDQQ CYGGGDLGAR TGAFDFAALG SLGLDGLDLG 240 PADCDYSDTT LLDYFSSAYT GSAATMMMLD SSGGGTGTGN GATDDGAYYG GPTTPWRTED 300 LCQTTARKLG DHQWGGGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455261.1	2e-81	transcription factor MYB2
TrEMBL	A0A1E5VU10	7e-84	A0A1E5VU10_9POAL; Transcription factor MYB108
STRING	Pavir.Ea00660.1.p	4e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330